Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
☆76Feb 20, 2026Updated last week
Alternatives and similar repositories for DigiPathAI
Users that are interested in DigiPathAI are comparing it to the libraries listed below
Sorting:
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Feb 8, 2022Updated 4 years ago
- ☆26Nov 28, 2022Updated 3 years ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆317Aug 1, 2025Updated 6 months ago
- Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis☆49Jun 6, 2023Updated 2 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- Full package for applying deep learning to virtual slides.☆72Sep 7, 2018Updated 7 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Oct 3, 2019Updated 6 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Jan 9, 2023Updated 3 years ago
- Whole Slide Images Segmentation using Patch UNet☆17Mar 30, 2020Updated 5 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆127Aug 23, 2022Updated 3 years ago
- Multilevel cnn notebooks for Camelyon17☆19Sep 29, 2019Updated 6 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆111Nov 8, 2025Updated 3 months ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 6 months ago
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- PyTorch implementation for Camelyon17 (Breast Tumor Classification)☆85Mar 7, 2018Updated 7 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆332Aug 22, 2022Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆61Mar 5, 2022Updated 3 years ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆95Jan 15, 2020Updated 6 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆234Feb 7, 2023Updated 3 years ago
- ☆346Nov 21, 2021Updated 4 years ago
- Codes available of a paper: An Efficient Cervical Whole Slide Image Analysis Framework Based on Multi-scale Semantic and Location Deep Fe…☆16Jul 26, 2022Updated 3 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆141Jun 14, 2024Updated last year
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 5 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 4 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆32May 3, 2021Updated 4 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆509Updated this week
- Open source tools for computational pathology - Nature BME☆1,609Apr 14, 2025Updated 10 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- ☆46Apr 12, 2023Updated 2 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆143Jun 9, 2022Updated 3 years ago
- Library for Digital Pathology Image Processing☆439Feb 16, 2026Updated last week
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- An open-source digital pathology based rapid image annotation tool☆90Feb 19, 2026Updated last week
- DeepLearning - Camelyon16 dataset☆129Oct 7, 2018Updated 7 years ago