mahmoodlab / TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
☆172Updated 3 years ago
Alternatives and similar repositories for TOAD:
Users that are interested in TOAD are comparing it to the libraries listed below
- A pipeline to segment tissue from the background in histological images☆67Updated last year
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆129Updated 3 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆197Updated 2 years ago
- Tools to build deep learning pipelines.☆92Updated 3 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆138Updated 9 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆96Updated 3 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆249Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- Histopathology Image Analysis☆93Updated last year
- Pretrained model for self supervised histopathology☆111Updated 2 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆101Updated 5 years ago
- Python Whole Slide Image Preprocessing☆276Updated 2 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆160Updated 6 months ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆189Updated last week
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆67Updated last month
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆146Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- First commit☆60Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆280Updated 2 months ago
- Contains codes of DeepAttnMISL in MEDIA'20☆57Updated 4 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆293Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆80Updated 2 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆54Updated 2 weeks ago
- Stain normalization tools for histological analysis and computational pathology☆128Updated last month
- DeepLearning - Camelyon16 dataset☆119Updated 6 years ago
- ☆57Updated 4 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆52Updated last year