mahmoodlab / TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
☆172Updated 3 years ago
Alternatives and similar repositories for TOAD:
Users that are interested in TOAD are comparing it to the libraries listed below
- A pipeline to segment tissue from the background in histological images☆68Updated last year
- Tools to build deep learning pipelines.☆96Updated 4 months ago
- Histopathology Image Analysis☆93Updated last year
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆251Updated last year
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆299Updated 2 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆202Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆284Updated 3 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆143Updated 10 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆98Updated 4 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆131Updated 3 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Updated 5 years ago
- Python Whole Slide Image Preprocessing☆283Updated 2 years ago
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆135Updated 2 months ago
- First commit☆60Updated 2 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆188Updated last week
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆52Updated last year
- ☆47Updated 2 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- A graph-transformer for whole slide image classification☆163Updated 9 months ago
- ☆43Updated last year
- List of pathology feature extractors and foundation models☆111Updated last month
- ☆52Updated 3 years ago
- Pretrained model for self supervised histopathology☆111Updated 2 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆161Updated 8 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆100Updated last year
- DeepLearning - Camelyon16 dataset☆119Updated 6 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆131Updated 9 months ago