simongraham / hovernet_inference
HoVer-Net inference code for simultaneous nuclear segmentation and classification
☆67Updated 2 years ago
Alternatives and similar repositories for hovernet_inference:
Users that are interested in hovernet_inference are comparing it to the libraries listed below
- ☆55Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- ☆35Updated 2 years ago
- Some stain normalization code☆88Updated 2 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆26Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated last year
- Histopathology Image Analysis☆93Updated last year
- Re-stained whole slide image alignment☆33Updated last year
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- ☆57Updated 7 months ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆88Updated 4 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆99Updated 5 months ago
- StainNet: a fast and robust stain normalization network☆46Updated 3 years ago
- Pipeline for computational pathology☆34Updated last year
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆146Updated 11 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆71Updated 3 months ago
- DeeperHistReg - Source Code☆55Updated last year
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆27Updated 4 years ago
- ☆14Updated 4 months ago
- Histopathology Slides Preprocessing Pipeline☆36Updated last month
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆52Updated last year
- CoNIC Challenge☆63Updated last year
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆61Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆20Updated last year
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆133Updated 3 years ago
- First commit☆61Updated 2 years ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆50Updated 4 months ago
- Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms☆29Updated last year