Alternatives and similar repositories for HIA

Users that are interested in HIA are comparing it to the libraries listed below

• KatherLab / preProcessing
  ☆45Updated 2 years ago
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆139Updated 4 years ago
• vqdang / H2T
  ☆35Updated 2 years ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆105Updated 9 months ago
• DIAGNijmegen / pathology-hooknet
  ☆63Updated 11 months ago
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• agentdr1 / LA_MIL
  Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
  ☆24Updated last year
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆154Updated last year
• histocartography / hact-net
  ☆71Updated 4 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆57Updated 2 years ago
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆22Updated last year
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆55Updated last year
• histocartography / zoommil
  ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…
  ☆66Updated 2 years ago
• Xiyue-Wang / RetCCL
  ☆102Updated last year
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆81Updated last year
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆31Updated last year
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆42Updated 5 months ago
• YashSharma / C2C
  Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
  ☆62Updated 3 years ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆32Updated 3 years ago
• taliq / TEA-graph
  First commit
  ☆62Updated 3 years ago
• uta-smile / DeepAttnMISL
  Contains codes of DeepAttnMISL in MEDIA'20
  ☆58Updated 4 years ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆96Updated 2 weeks ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆70Updated 2 years ago
• AGFoersch / MultiStainDeepLearning
  Code from Foersch et al. (Under Construction / Development)
  ☆37Updated 2 years ago
• wanghao14 / Stain_Normalization
  Some stain normalization code
  ☆89Updated 2 years ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆70Updated 6 months ago
• schaugf / HEnorm_python
  H&E histopathological staining normalization
  ☆109Updated 5 years ago
• Biooptics2021 / PathFinder
  ☆54Updated 2 years ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year