smujiang / WSIToolsLinks
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
☆55Updated 8 months ago
Alternatives and similar repositories for WSITools
Users that are interested in WSITools are comparing it to the libraries listed below
Sorting:
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- ☆56Updated 3 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆93Updated 9 months ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆24Updated this week
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆154Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆31Updated last year
- Python library for processing whole slide images (WSIs) in sdpc format☆56Updated 7 months ago
- Tools to build deep learning pipelines.☆108Updated 9 months ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- Multimodal prototyping for cancer survival prediction - ICML 2024☆91Updated 6 months ago
- ☆54Updated 2 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆83Updated 3 weeks ago
- ☆53Updated 4 months ago
- Virtual Alignment of pathoLogy Image Series☆172Updated 2 months ago
- Solid Tumor Associative Modeling in Pathology☆84Updated this week
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆74Updated 5 months ago
- Histopathology Slides Preprocessing Pipeline☆42Updated 5 months ago
- ☆63Updated 11 months ago
- Standardized benchmark for computational pathology foundation models.☆96Updated 3 weeks ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- First commit☆62Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 7 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆44Updated 4 years ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆39Updated 3 months ago
- DeeperHistReg - Source Code☆69Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆36Updated 8 months ago