smujiang / WSIToolsLinks
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
☆56Updated 9 months ago
Alternatives and similar repositories for WSITools
Users that are interested in WSITools are comparing it to the libraries listed below
Sorting:
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆92Updated 9 months ago
- ☆56Updated 3 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆155Updated last year
- Histopathology Image Analysis☆92Updated 2 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆24Updated 3 weeks ago
- ☆55Updated 2 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated last month
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆44Updated 4 years ago
- Standardized benchmark for computational pathology foundation models.☆99Updated last month
- Multimodal prototyping for cancer survival prediction - ICML 2024☆92Updated 6 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆49Updated last year
- Tools to build deep learning pipelines.☆109Updated 10 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Python library for processing whole slide images (WSIs) in sdpc format☆57Updated 7 months ago
- ☆63Updated 11 months ago
- DeeperHistReg - Source Code☆70Updated last year
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- Awesome List of Digital and Computational Pathology Resources☆74Updated 8 months ago
- First commit☆63Updated 3 years ago
- Virtual Alignment of pathoLogy Image Series☆174Updated 2 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆139Updated 4 years ago
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆75Updated 5 months ago
- Solid Tumor Associative Modeling in Pathology☆85Updated last week
- ☆20Updated 2 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- CEll spatial Organization-based graph convolutional network☆26Updated last year
- ☆54Updated 5 months ago