Alternatives and similar repositories for WSITools

Users that are interested in WSITools are comparing it to the libraries listed below

• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆107Updated last week
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆94Updated 11 months ago
• PathologyDataScience / MuTILs_Panoptic
  Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…
  ☆25Updated 2 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆32Updated last year
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆155Updated last year
• wenqi006 / SlideGraph
  ☆57Updated 3 years ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆83Updated last year
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• WonderLandxD / opensdpc
  Python library for processing whole slide images (WSIs) in sdpc format
  ☆59Updated 9 months ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆110Updated 11 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last week
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆185Updated 4 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆69Updated 2 years ago
• open-pathology / awesome-pathology
  Awesome List of Digital and Computational Pathology Resources
  ☆86Updated 9 months ago
• DIAGNijmegen / pathology-hooknet
  ☆65Updated last year
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆110Updated 2 months ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆75Updated last year
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆141Updated 4 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆96Updated 8 months ago
• Biooptics2021 / PathFinder
  ☆56Updated 2 years ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆70Updated 7 months ago
• vqdang / H2T
  ☆37Updated 2 years ago
• hrlblab / CS-MIL
  ☆54Updated 6 months ago
• AIRMEC / im4MEC
  Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…
  ☆51Updated last year
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆154Updated 4 months ago
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆25Updated last year
• liupei101 / Pipeline-Processing-TCGA-Slides-for-MIL
  This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.
  ☆78Updated 7 months ago
• mahmoodlab / MIL-Lab
  Feather - Lightweight supervised slide foundation models (ICML 2025)
  ☆99Updated 2 months ago
• Xiyue-Wang / RetCCL
  ☆101Updated last year