Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
☆57Dec 10, 2024Updated last year
Alternatives and similar repositories for WSITools
Users that are interested in WSITools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Jul 3, 2021Updated 5 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29May 21, 2024Updated 2 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆57Sep 25, 2023Updated 2 years ago
- Library for Digital Pathology Image Processing☆462Updated this week
- Benchmark for pathology foundation models robustness to non-biological medical center differences.☆31Apr 2, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆86Jul 11, 2024Updated 2 years ago
- Exploring Low-Rank Property in Multiple Instance Learning for Whole Slide Image Classification☆29Dec 17, 2024Updated last year
- ☆12Oct 4, 2023Updated 2 years ago
- Pseudo-Bag Mixup Augmentation for Multiple Instance Learning-Based Whole Slide Image Classification (IEEE TMI 2024)☆70Mar 17, 2025Updated last year
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆18Aug 11, 2020Updated 5 years ago
- this repo is for Grand Challenge WSSS4LUAD, detail information about the contest is on https://wsss4luad.grand-challenge.org/WSSS4LUAD/☆20Apr 29, 2022Updated 4 years ago
- WSI处理工具☆27May 25, 2021Updated 5 years ago
- Hibou: Foundational Models for Pathology☆79Oct 23, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆272Dec 23, 2023Updated 2 years ago
- HVTSurv: Hierarchical Vision Transformer for Patient-level Survival Prediction from Whole Slide Image-AAAI 2023☆36Jul 2, 2023Updated 3 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Aug 9, 2022Updated 3 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆327Apr 13, 2026Updated 3 months ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- Open source tools for computational pathology - Nature BME☆1,714Apr 14, 2025Updated last year
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- ☆22Jan 6, 2026Updated 6 months ago
- CVPR 2023 Highlight☆102Apr 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆113Jun 9, 2023Updated 3 years ago
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆22Oct 1, 2025Updated 9 months ago
- ☆11Jan 8, 2024Updated 2 years ago
- base on MIL method☆13Jul 25, 2024Updated last year
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- ☆19Oct 12, 2022Updated 3 years ago
- ☆32Nov 1, 2022Updated 3 years ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆54Feb 2, 2024Updated 2 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Powerful, open-source AI tools for digital pathology.☆367May 7, 2026Updated 2 months ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆622Mar 19, 2024Updated 2 years ago
- [ICCV 2023 Oral, IJCV 2025] Multiple Instance Learning Framework with Masked Hard Instance Mining for Whole Slide Image Classification☆97Jan 7, 2026Updated 6 months ago
- Toolkit for large-scale whole-slide image processing.☆602Updated this week
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆117Nov 8, 2025Updated 8 months ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆540Updated this week
- Official Inplementation of 《WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole Slide Images》(MICCAI 2024 O…☆85Jun 6, 2025Updated last year