Alternatives and similar repositories for WSITools

Users that are interested in WSITools are comparing it to the libraries listed below

• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆104Updated 7 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆30Updated last year
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆91Updated 7 months ago
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆152Updated last year
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆79Updated last year
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• Xiyue-Wang / RetCCL
  ☆103Updated last year
• wenqi006 / SlideGraph
  ☆56Updated 3 years ago
• Paige-AI / paige-ml-sdk
  This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…
  ☆38Updated 2 months ago
• Biooptics2021 / PathFinder
  ☆54Updated 2 years ago
• DIAGNijmegen / pathology-hooknet
  ☆62Updated 9 months ago
• WonderLandxD / opensdpc
  Python library for processing whole slide images (WSIs) in sdpc format
  ☆52Updated 5 months ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆66Updated last year
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆55Updated last year
• PathologyDataScience / MuTILs_Panoptic
  Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…
  ☆21Updated last month
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆104Updated 8 months ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆87Updated 3 weeks ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆139Updated 3 years ago
• hrlblab / CS-MIL
  ☆53Updated 3 months ago
• taliq / TEA-graph
  First commit
  ☆62Updated 3 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆166Updated 3 weeks ago
• wangxiaodong1021 / HCC_Prognostic
  Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning
  ☆44Updated 4 years ago
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆86Updated 4 months ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆53Updated 4 months ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆54Updated 3 years ago
• vkola-lab / tmi2022
  A graph-transformer for whole slide image classification
  ☆167Updated last year
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆40Updated 4 months ago
• sdw95927 / Ceograph
  CEll spatial Organization-based graph convolutional network
  ☆26Updated last year