Detect viral infection and integration sites on NGS input. Manuscript is in preparation.
☆12Jan 20, 2026Updated 9 months ago
Alternatives and similar repositories for FastViFi
Users that are interested in FastViFi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible framework for nucleosome profiling of cell-free DNA☆10May 12, 2025Updated last year
- HIVID2 is a tool for detecting virus integration events in the host genome.☆12Oct 1, 2023Updated 3 years ago
- ☆21Jun 23, 2021Updated 5 years ago
- ☆18Aug 29, 2025Updated last year
- Create a clustergram visualization from a user defined network in tsv format.☆13May 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆31Jul 13, 2021Updated 5 years ago
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated 2 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- ☆11May 14, 2025Updated last year
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- GenePattern Python Library☆11Jan 26, 2024Updated 2 years ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 10 months ago
- ☆11Dec 4, 2019Updated 6 years ago
- RNAseq analysis pipeline☆28Aug 5, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30May 8, 2018Updated 8 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- Laboratory Information Management System 👩🏻🔬 🧬 👨🏽💻☆36Oct 13, 2026Updated last week
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- ☆14Jul 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A "Datatable" like plugin which allows you to build a table based off of custom queries, supporting row selection, data export, and more!☆13Jul 18, 2023Updated 3 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated last year
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 4 years ago
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- Omics: Angular + Rust☆11Jan 20, 2023Updated 3 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated 2 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 months ago
- 微信扫码登陆在Django上的实现☆11Jan 14, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Determine the biological sex of a human whole-genome BAM file☆16Feb 10, 2019Updated 7 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- ☆14Oct 13, 2026Updated last week
- ☆14Sep 2, 2021Updated 5 years ago
- ☆16Jun 18, 2020Updated 6 years ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 7 months ago