sara-javadzadeh / FastViFiLinks
Detect viral infection and integration sites on NGS input. Manuscript is in preparation.
☆10Updated 9 months ago
Alternatives and similar repositories for FastViFi
Users that are interested in FastViFi are comparing it to the libraries listed below
Sorting:
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆20Updated 2 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆87Updated 2 weeks ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 6 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆26Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- cDNA read preprocessing☆79Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- SV detection tool for nanopore sequence reads☆96Updated 8 months ago
- ☆25Updated 6 years ago
- ☆59Updated 4 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆75Updated 3 weeks ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- Detection of viruses from RNA-Seq on human samples☆46Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆23Updated 9 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆23Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- ☆27Updated 9 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- ☆16Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated 2 weeks ago