sara-javadzadeh / FastViFi
Detect viral infection and integration sites on NGS input. Manuscript is in preparation.
☆10Updated last month
Alternatives and similar repositories for FastViFi:
Users that are interested in FastViFi are comparing it to the libraries listed below
- structure detection program☆17Updated 4 months ago
- A simple script to create a customizable html file from an AnnotSV output.☆18Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆19Updated last year
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆24Updated 3 years ago
- GATK4 Best Practice Nextflow Pipeline☆31Updated 7 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆24Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Long-read Isoform Quantification and Analysis☆39Updated last week
- ☆16Updated 3 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- ☆51Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- SV detection tool for nanopore sequence reads☆90Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆38Updated 3 weeks ago
- Toolkit for calling structural variants using short or long reads☆101Updated 2 weeks ago
- TIDDIT - structural variant calling☆74Updated 2 weeks ago
- ☆39Updated 11 months ago
- perSVade: personalized Structural Variation detection☆38Updated last month