LadnerLab / PepSIRF
PepSIRF: Peptide-based Serological Immune Response Framework
☆10Updated last month
Alternatives and similar repositories for PepSIRF:
Users that are interested in PepSIRF are comparing it to the libraries listed below
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 2 months ago
- ☆9Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Analysis tools for PhIP-seq experiments☆12Updated 3 years ago
- PanGenomePipeline☆15Updated 11 months ago
- 16S pipeline using qiime2 created with snakemake☆11Updated 2 months ago
- ☆15Updated 4 months ago
- Bayesian enrichment estimation in R☆10Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Updated last year
- phylogenetic analyses informed by deep mutational scanning data☆14Updated 9 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 6 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆11Updated last month
- Omics data analysis☆14Updated 2 weeks ago
- Python bindings for the TaxonKit library☆35Updated 2 months ago
- Next-generation PRALINE sequence alignment program.☆9Updated 6 years ago
- Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute☆14Updated last month
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 3 weeks ago
- Rapid and accurate ancestry inference using SNVs.☆18Updated last month
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated 10 months ago
- ☆12Updated 5 months ago
- Generation and update of protein families☆12Updated this week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- k-mer similarity analysis pipeline☆20Updated 2 months ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆16Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆26Updated 3 weeks ago
- ☆12Updated last week
- An RNA virus strain-level identification tool for short reads.☆21Updated 10 months ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 3 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago