PepSIRF: Peptide-based Serological Immune Response Framework
☆12Jan 8, 2026Updated last month
Alternatives and similar repositories for PepSIRF
Users that are interested in PepSIRF are comparing it to the libraries listed below
Sorting:
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- A viral haplotype reconstruction tool for long reads.☆13Mar 2, 2024Updated last year
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 3 months ago
- ☆18Nov 7, 2024Updated last year
- ☆20Jun 10, 2024Updated last year
- An RNA virus strain-level identification tool for short reads.☆23Jan 29, 2026Updated last month
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated last year
- ☆36Feb 1, 2022Updated 4 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆36Feb 17, 2022Updated 4 years ago
- Developing a Deep learning classification-based model for screening pharmaceutical compounds with hERG inhibitory activity (cardiotoxicit…☆14Oct 2, 2024Updated last year
- AI for a cure, a combination of Latent-GAN and VAE-JTNN to create 100% valid drug like molecules☆10Mar 16, 2020Updated 5 years ago
- gmx_corr converts the covariance matrix which is produced by GROMACS covar to cross correlation matrix and creates a heat map figure.☆11Oct 11, 2022Updated 3 years ago
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- Graph Clustering Merger☆36Mar 25, 2024Updated last year
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- Python implementation of various 2D and 3D compactness measures.☆10Aug 17, 2022Updated 3 years ago
- Subplex Optimization Algorithm☆11Nov 25, 2025Updated 3 months ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- rim provides an interface to Maxima for R. Maxima is a powerful and fairly complete computer algebra system.☆11Nov 25, 2025Updated 3 months ago
- ☆10Apr 22, 2019Updated 6 years ago
- [MLHC 2021] Model Selection for Offline RL: Practical Considerations for Healthcare Settings. https://arxiv.org/abs/2107.11003☆10Oct 6, 2022Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A program for the conformational search in flexible acyclic molecules☆10Jul 12, 2022Updated 3 years ago
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- Drug-Target Interaction Prediction Using Convolutional Neural Networks By Images of Compounds☆10Jun 16, 2020Updated 5 years ago
- OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM.☆12Feb 20, 2026Updated last week
- A generic PK/PD simulation platform based on rxode2 and mrgsolve engines.☆10Jan 28, 2026Updated last month
- ☆13Dec 3, 2024Updated last year
- An algorithm that carries out both large-loop and small-loop TEM modeling.☆11Jan 4, 2022Updated 4 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- The Chemical Reaction Optimization (CRO) algorithm with dependent classes in python 3.☆11Apr 21, 2020Updated 5 years ago
- Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.☆11Jul 15, 2024Updated last year