Alternatives and similar repositories for PixelDB

Users that are interested in PixelDB are comparing it to the libraries listed below

• DeepRank / iScore
  iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…
  ☆31Updated 3 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• JosePereiraUA / rosetta-scripts
  Some Rosetta Scripts that allow for various simple tasks
  ☆14Updated 6 years ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆21Updated 2 years ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆16Updated 11 months ago
• wendao / CAGE-Prox
  Computer aided proximal decaging as a universal strategy for temporal protein activation
  ☆27Updated 8 months ago
• ba-lab / disteval
  DISTEVAL: A web-server for evaluating protein inter-residue distances
  ☆18Updated 3 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆36Updated 2 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 7 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• ak422 / DDAffinity
  ☆24Updated 8 months ago
• Hoecker-Lab / protlego
  Automated construction of protein chimeras and their analysis.
  ☆15Updated 2 years ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆36Updated last year
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆33Updated 4 years ago
• vmullig / ndm1_design_scripts
  Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1
  ☆19Updated 4 years ago
• haddocking / HADDOCK-antibody-antigen
  Material to run the HADDOCK antibody-antigen modelling protocol
  ☆23Updated this week
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆41Updated 7 months ago
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆29Updated 3 years ago
• csi-greifflab / developability_profiling
  ☆28Updated 5 months ago
• AaronFeller / p2smi
  ☆28Updated last month
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆31Updated last year
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 10 months ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆20Updated 11 months ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• zhenglz / OnionNet-SFCT
  Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term
  ☆29Updated last year
• Wang-Lin-boop / AlphaFoldDB_Processing
  This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …
  ☆14Updated 2 years ago