☆23Oct 8, 2026Updated last week
Alternatives and similar repositories for oncokb-public
Users that are interested in oncokb-public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Oct 6, 2026Updated last week
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆23Sep 20, 2026Updated 3 weeks ago
- Annotates variants in MAF with OncoKB annotation.☆147Aug 25, 2026Updated last month
- Data set for the paper submitted to PLOS One, which is entitled "Real-time Gastric Polyp Detection using Convolutional Neural Networks".☆14Oct 24, 2019Updated 6 years ago
- Run cBioPortal using Docker Compose☆23Oct 6, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- A centralized location for storing curated data from cBioPortal☆218Updated this week
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- Hough CNN implementation - new implementation from scratch - based on pre-existing V-Net code.☆12Oct 25, 2016Updated 9 years ago
- Methylation array analysis pipeline for CPTAC☆10Sep 1, 2022Updated 4 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Oct 3, 2026Updated 2 weeks ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆10Sep 29, 2019Updated 7 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆34Jul 27, 2026Updated 2 months ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆31Oct 10, 2026Updated last week
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆62Jun 7, 2019Updated 7 years ago
- 从科学基金共享服务网爬取所有公开的国自然结题项目☆21Sep 8, 2017Updated 9 years ago
- ☆10Feb 4, 2021Updated 5 years ago
- Notebooks to accompany the blog posts about the 2nd place Kaggle RSNA winners: https://github.com/darraghdog/rsna☆30Jan 29, 2020Updated 6 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Backend server for Genome Nexus☆46Sep 1, 2026Updated last month
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- ☆18Jan 23, 2018Updated 8 years ago
- ☆21Jun 23, 2021Updated 5 years ago
- Keyword Extraction for Pathology Reports with BERT☆12Sep 2, 2020Updated 6 years ago
- Internationalisation of the HPO content☆20Feb 27, 2023Updated 3 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Oct 5, 2026Updated last week
- Central repository for the VICC metakb web application☆15Oct 5, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 9 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- An automatic classification tool for PVS1 interpretation of null variants☆47Mar 4, 2024Updated 2 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 3 years ago