Alternatives and similar repositories for oncokb-public

Users that are interested in oncokb-public are comparing it to the libraries listed below

• broadinstitute / oncotator
  ☆69Updated 3 years ago
• broadinstitute / mutect
  MuTect -- Accurate and sensitive cancer mutation detection
  ☆102Updated 2 years ago
• WGLab / phenolyzer
  phenotype-based prioritization of candidate genes for human diseases
  ☆65Updated 2 years ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆50Updated 10 months ago
• genome-nexus / genome-nexus
  Backend server for Genome Nexus
  ☆45Updated this week
• parklab / SigMA
  Mutational signature analysis for low statistics SNV data
  ☆64Updated last year
• genome / somatic-sniper
  A tool to call somatic single nucleotide variants.
  ☆41Updated 10 years ago
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆89Updated 4 months ago
• bcgsc / pori
  Platform for Oncogenomic Reporting and Interpretation (PORI)
  ☆35Updated last week
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• PGDX / cerebro-paper
  ☆23Updated 7 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆62Updated 5 years ago
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆75Updated last year
• WGLab / Phen2Gene
  Phenotype driven gene prioritization for HPO
  ☆51Updated 4 years ago
• cBioPortal / datahub-study-curation-tools
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
  ☆20Updated 3 weeks ago
• AstraZeneca-NGS / reference_data
  Reference data: BED files, genes, transcripts, variations.
  ☆88Updated 8 years ago
• oncokb / oncokb-annotator
  Annotates variants in MAF with OncoKB annotation.
  ☆138Updated last week
• griffithlab / pVAC-Seq
  DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
  ☆61Updated 6 years ago
• griffithlab / DeepSVR
  ☆51Updated 6 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆57Updated 4 years ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 3 years ago
• Roth-Lab / pyclone-vi
  Fast method for inferring cancer clonal population structure from SNV data.
  ☆66Updated 2 weeks ago
• stjude / CICERO
  CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
  ☆41Updated last month
• AlexandrovLab / SigProfilerAssignment
  Assignment of known mutational signatures to individual samples and individual somatic mutations
  ☆71Updated last week
• YangLab / CIRCexplorer
  A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …
  ☆62Updated 6 years ago
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆110Updated last year
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 6 years ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆19Updated last year