TencentAILabHealthcare / scpDeconvLinks
☆11Updated last year
Alternatives and similar repositories for scpDeconv
Users that are interested in scpDeconv are comparing it to the libraries listed below
Sorting:
- ☆145Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago
- Identify spatial domain☆87Updated 7 months ago
- ☆41Updated 2 years ago
- ☆42Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- ☆66Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆252Updated 2 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆154Updated last year
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆35Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆62Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 10 months ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- ☆30Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆49Updated 2 years ago
- a unified single-cell data integration framework by optimal transport☆34Updated last year
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆172Updated 4 years ago
- ☆88Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆141Updated last month
- ☆128Updated 3 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆76Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆50Updated last year
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆22Updated 2 months ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆25Updated 2 years ago
- ☆35Updated 3 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆33Updated last year