pygridtools / drmaa-pythonLinks
Python wrapper around the C DRMAA library.
☆108Updated 6 years ago
Alternatives and similar repositories for drmaa-python
Users that are interested in drmaa-python are comparing it to the libraries listed below
Sorting:
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆84Updated 2 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆146Updated 5 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆175Updated 4 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated last year
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆30Updated 5 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 9 years ago
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- Deploy Dask on DRMAA clusters☆40Updated 4 years ago
- DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm☆48Updated last month
- ☆93Updated last month
- SevenBridges Python Api bindings☆46Updated 11 months ago
- Python Scientific Pipeline Management System☆71Updated 2 years ago
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆69Updated 3 years ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- Dockerfiles to build Biopython instances☆28Updated 9 years ago
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Updated 5 months ago
- a simple read-only sequence database, designed for short reads☆65Updated last year
- Pretty GridEngine, Torque and Platform LSF status tables☆33Updated 9 years ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- submit jobs to slurm with quick-and-dirty python☆95Updated 3 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 9 months ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- streamlined singularity python client (spython) for singularity☆63Updated last month
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 8 years ago