Python wrapper around the C DRMAA library.
☆108Mar 16, 2019Updated 6 years ago
Alternatives and similar repositories for drmaa-python
Users that are interested in drmaa-python are comparing it to the libraries listed below
Sorting:
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆85Feb 27, 2023Updated 3 years ago
- High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ☆20Feb 17, 2014Updated 12 years ago
- Dockerfile to build a container with SGE installed☆24Mar 23, 2016Updated 9 years ago
- Deploy Dask on DRMAA clusters☆40Feb 8, 2021Updated 5 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆146May 1, 2020Updated 5 years ago
- ☆33Updated this week
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated last year
- Docker images for deploying SGE (Son of Grid Engine) cluster☆23Sep 29, 2017Updated 8 years ago
- Project for integration of OPS and the Knime workflow engine☆14Aug 12, 2015Updated 10 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm☆48Dec 15, 2025Updated 2 months ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- ☆13Aug 20, 2025Updated 6 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- 🔬Experimental Minio (S3) Gateway for iRODS 💾☆12Aug 13, 2019Updated 6 years ago
- ☆13Nov 20, 2015Updated 10 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- A simple pythonic interface to biomart.☆57Feb 6, 2020Updated 6 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 8 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Remote Spawner class for JupyterHub to spawn IPython notebooks and a remote server and tunnel the port via SSH☆26Aug 5, 2016Updated 9 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Jun 4, 2019Updated 6 years ago
- ☆16Oct 23, 2023Updated 2 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Jupyter Interactive Workflows for High Performance Computing☆15Apr 15, 2020Updated 5 years ago
- Reference implementation of the DRMAAv2 C Language Binding☆24Apr 5, 2013Updated 12 years ago
- Create clusters of VMs on the cloud and configure them with Ansible.☆340Sep 11, 2023Updated 2 years ago
- BS-seq analysis pipeline☆45Mar 28, 2023Updated 2 years ago
- Documented examples of Jupyterhub deployment in HPC settings☆36Jun 11, 2024Updated last year
- A Light-Weight Access Layer for Distributed Computing Infrastructure and Reference Implementation of the SAGA Python Language Bindings.☆84Nov 6, 2025Updated 3 months ago
- Specification for the Workflow Description Language (WDL).☆844Feb 25, 2026Updated last week
- ☆16Dec 25, 2024Updated last year
- A lightweight Python library for distributed computing on Sun Grid Engines☆21Oct 22, 2020Updated 5 years ago
- A reference-assisted assembly tool for producing draft chromosome sequences.☆42Jun 24, 2024Updated last year
- Workflow Description Language compiler for the DNAnexus platform☆42Jun 29, 2023Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- Fresh Python Mesos Scheduler and Executor driver☆18Oct 19, 2017Updated 8 years ago
- unmaintained repository. development moved to https://github.com/georg-rath/ogrt☆15Feb 2, 2017Updated 9 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago