FredHutch / slurm-examples
examples of using slurm in life sciences workflows using posix file systems and object storage
☆39Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for slurm-examples
- dead Simple Queue - Slurm arrays for files with jobs in them.☆23Updated 2 years ago
- slurmR: A Lightweight Wrapper for Slurm☆58Updated 4 months ago
- example singularity definition files and demos☆27Updated 6 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- Howto and implementation documentation☆21Updated this week
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 3 weeks ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆17Updated this week
- Summary of the Carpentries pedagogic model and some lesson ideas from the community☆13Updated 4 years ago
- Data and workflow examples☆16Updated 6 years ago
- Project Organization and Management for Genomics☆24Updated this week
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 4 months ago
- a quick shiny server in a Singularity Container. For @griznog!☆17Updated 6 years ago
- Funding schemes and travel grant opportunities for postdocs☆50Updated 5 years ago
- a full day lesson material to teach the basics of using a HPC cluster to novices☆33Updated 5 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- ☆13Updated last year
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Updated this week
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- Class materials for the NIH HPC snakemake class☆16Updated last month
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- International BioHackathon Directory of Events, Projects and Communities☆9Updated last month
- R in a Singularity container☆28Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆18Updated this week
- A DRAFT, early stage book on snakemake.☆17Updated last year
- convert a singularity image back to Docker, full circle! #containerfriends☆22Updated 4 years ago
- Information and ideas for CarpentryCon☆20Updated 2 months ago
- ☆15Updated 8 months ago
- Webinars&Tutorial on Containers on HPC and Cloud with Singularity☆26Updated 2 years ago
- ☆19Updated last week