aetherAI / whole-slide-cnn
This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological classification of lung cancer types by deep learning".
☆62Updated 3 years ago
Alternatives and similar repositories for whole-slide-cnn:
Users that are interested in whole-slide-cnn are comparing it to the libraries listed below
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆53Updated last year
- Histopathology Image Analysis☆93Updated last year
- Interactive Segmentation of Nucleus☆62Updated 2 years ago
- ☆57Updated 6 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆71Updated 3 months ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆133Updated 3 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆86Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆99Updated 5 months ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆61Updated 3 years ago
- Pretrained model for self supervised histopathology☆111Updated 2 years ago
- Histopathology Slides Preprocessing Pipeline☆36Updated last month
- ☆30Updated 5 years ago
- A pipeline to segment tissue from the background in histological images☆68Updated 2 years ago
- ☆40Updated 3 years ago
- This library is designed to speed up huge model training on unified memory.☆28Updated 3 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆52Updated last year
- ☆53Updated 3 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆24Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆54Updated 2 years ago
- ☆44Updated 2 years ago
- ☆43Updated 2 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆87Updated 4 months ago
- Stain normalization tools for histological analysis and computational pathology☆138Updated 3 months ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆101Updated last year
- Image-to-Image Translation in PyTorch☆23Updated last year