Framework for registration of sequential digitized histology slices
☆28Mar 24, 2022Updated 3 years ago
Alternatives and similar repositories for HistoReg
Users that are interested in HistoReg are comparing it to the libraries listed below
Sorting:
- Software used by the AGH team during the ANHIR challenge.☆28Dec 14, 2020Updated 5 years ago
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Oct 11, 2020Updated 5 years ago
- Code used to create the DeepHistReg submission to the ANHIR challenge.☆32Apr 4, 2025Updated 10 months ago
- BIRL: Benchmark on Image Registration methods with Landmark validations☆94Jan 4, 2022Updated 4 years ago
- DeeperHistReg - Source Code☆93Apr 26, 2024Updated last year
- Robust quad-tree based registration on whole slide images☆21Apr 2, 2025Updated 11 months ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 4 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- Dataset: landmarks for registration of histology images☆34Jan 9, 2021Updated 5 years ago
- ☆24Jun 6, 2023Updated 2 years ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Virtual Alignment of pathoLogy Image Series☆208Jun 25, 2025Updated 8 months ago
- Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.☆13Aug 28, 2023Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆27Mar 14, 2025Updated 11 months ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Oct 29, 2020Updated 5 years ago
- ☆22Mar 23, 2024Updated last year
- ☆11Jan 13, 2020Updated 6 years ago
- Piecewise alignment for layers of mosaics☆36Feb 18, 2026Updated last week
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- ☆15Oct 7, 2019Updated 6 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated 2 weeks ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago
- Training/Evaluation code for HoVer-NeXt☆17Nov 2, 2025Updated 4 months ago
- 2D image registration in python, using napari.☆16Dec 7, 2021Updated 4 years ago
- Inference code for HoVer-NeXt☆46Oct 26, 2025Updated 4 months ago
- ☆16Oct 11, 2022Updated 3 years ago
- LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)☆16Jun 28, 2021Updated 4 years ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 6 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 5 months ago
- ☆18Jun 24, 2019Updated 6 years ago
- ☆46Jan 10, 2022Updated 4 years ago
- Full package for applying deep learning to virtual slides.☆72Sep 7, 2018Updated 7 years ago
- ☆21Dec 30, 2025Updated 2 months ago
- ☆22Apr 16, 2022Updated 3 years ago
- MIST-inspired microscope image stitching package☆80Jan 29, 2026Updated last month
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and anno…☆20Feb 15, 2026Updated 2 weeks ago
- Tissue and Cancer Type Identification using Deep Neural Networks☆15Sep 30, 2018Updated 7 years ago