CBICA / HistoRegLinks
Framework for registration of sequential digitized histology slices
☆28Updated 3 years ago
Alternatives and similar repositories for HistoReg
Users that are interested in HistoReg are comparing it to the libraries listed below
Sorting:
- Software used by the AGH team during the ANHIR challenge.☆28Updated 5 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 2 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆74Updated 11 months ago
- BIRL: Benchmark on Image Registration methods with Landmark validations☆93Updated 3 years ago
- Dataset: landmarks for registration of histology images☆34Updated 4 years ago
- ☆46Updated 3 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- WSICS☆30Updated 6 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Interactive Segmentation of Nucleus☆66Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆24Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆41Updated 3 months ago
- ☆43Updated 3 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Updated 4 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Updated 4 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆139Updated last year
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Updated 4 months ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆38Updated 4 years ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆52Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆65Updated last year
- Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis☆49Updated 2 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated 2 years ago
- Benchmarking toolkit for patch-based histopathology image classification.☆43Updated 2 years ago
- Code used to create the DeepHistReg submission to the ANHIR challenge.☆31Updated 8 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago