Alternatives and similar repositories for PANACEA

Users that are interested in PANACEA are comparing it to the libraries listed below

• egeulgen / driveR
  Prioritizing Cancer Driver Genes Using Genomics Data
  ☆17Updated last year
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆62Updated 4 months ago
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆108Updated 7 months ago
• anhtr / HPAanalyze
  A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
  ☆36Updated 3 weeks ago
• MRCIEU / metaboprep
  a pipeline of metabolomics data processing and quality control
  ☆25Updated this week
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆42Updated 2 weeks ago
• pnnl / leapR
  ☆17Updated 2 weeks ago
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 4 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆43Updated 7 months ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 6 months ago
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆23Updated 2 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆37Updated last year
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆36Updated 2 years ago
• willtownes / glmpca
  ☆94Updated last year
• selbouhaddani / OmicsPLS
  R package for High dimensional data analysis and integration with O2PLS!
  ☆33Updated 2 months ago
• immunogenomics / masc
  MASC: Mixed-effects Association testing for Single Cells
  ☆15Updated 4 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated this week
• edvanburen / twosigma
  twosigma
  ☆8Updated 2 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆64Updated this week
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆30Updated 10 months ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated last month
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆30Updated last month
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 4 months ago
• omnideconv / SimBu
  Simulate pseudo-bulk RNAseq samples from scRNAseq expression data
  ☆17Updated last month
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 3 weeks ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• wurst-theke / ButchR
  ☆13Updated 2 years ago