An algorithm in Python that locates the TLS and lymphoid aggregates in tissues using immune cell coordinates
☆12Aug 3, 2026Updated 2 months ago
Alternatives and similar repositories for TLS-Finder
Users that are interested in TLS-Finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 24, 2024Updated 2 years ago
- ☆36Oct 22, 2025Updated 11 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆17Feb 6, 2026Updated 8 months ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- ☆35May 27, 2026Updated 4 months ago
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 7 months ago
- Micro DNA identification☆24Aug 5, 2021Updated 5 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Code to go with my article "The AWK book's 60-line version of Make"☆17Sep 10, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆34Feb 25, 2025Updated last year
- A no hassle tool for analyzing your favorite CRISPR screen dataset!☆11Apr 16, 2021Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- High-dimensional distance metrics for scRNAseq☆12Dec 14, 2021Updated 4 years ago
- ☆63Jan 9, 2026Updated 9 months ago
- Pan-cancer mycobiome atlas☆33Oct 7, 2022Updated 4 years ago
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆50Sep 25, 2026Updated 3 weeks ago
- ☆25Jun 30, 2026Updated 3 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- scRNA analysis of public dataset on bladder cancer☆20Dec 12, 2025Updated 10 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆38Feb 10, 2025Updated last year
- AnnData for the browser☆14Oct 5, 2026Updated last week
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Spatial analysis of FISH data☆32Jun 5, 2026Updated 4 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆32Updated this week
- Starter repo for regl explorations☆10May 26, 2017Updated 9 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Aghast: aggregated, histogram-like statistics, sharable as Flatbuffers.☆17Oct 25, 2022Updated 3 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Know more about Shirley Liu lab at☆13Jan 27, 2026Updated 8 months ago
- ☆14Mar 28, 2025Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- ☆45May 23, 2025Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Sep 2, 2026Updated last month