ZhangJlab / MICMIC
☆8Updated 6 years ago
Alternatives and similar repositories for MICMIC:
Users that are interested in MICMIC are comparing it to the libraries listed below
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- DriverPower☆26Updated 2 months ago
- An R package to interpret biological trends from DNA methylation data☆17Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- ☆17Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated this week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- ☆10Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 5 years ago
- ATAC-seq lab for BIOINF525☆10Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago