ZhangJlab / MICMIC
☆8Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for MICMIC
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆19Updated 2 years ago
- DriverPower☆26Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated last week
- An R package to interpret biological trends from DNA methylation data☆16Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆9Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆15Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- Filter and prioritize fusion calls☆20Updated last month
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆10Updated last week
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 2 years ago
- ☆17Updated 5 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆18Updated 3 weeks ago
- ☆18Updated 3 months ago
- ☆11Updated last year
- ☆23Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆11Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆18Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 4 months ago
- ☆13Updated 7 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆22Updated 2 years ago