☆13May 29, 2026Updated 4 months ago
Alternatives and similar repositories for aws-infra-nextflow
Users that are interested in aws-infra-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Updated this week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 11 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- ☆10Apr 16, 2025Updated last year
- Fast sequence distance estimates☆34Updated this week
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Sep 29, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 3 years ago
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆16Jul 21, 2026Updated 2 months ago
- On-demand containers provisioning service☆62Updated this week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 7 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Sep 1, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆96Dec 13, 2024Updated last year
- Classic hello world script in Nextflow language☆26May 13, 2026Updated 5 months ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆58Jul 24, 2025Updated last year
- Profiling NTM WGS data☆19Sep 1, 2026Updated last month
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- MemVerge Netflow Plugin☆16Jun 24, 2025Updated last year
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 2 months ago
- Linter rules for Nextflow DSL scripts☆35May 25, 2026Updated 4 months ago
- nf-test utility functions☆13Sep 29, 2026Updated 2 weeks ago
- Transfer coordinates across genomes☆23Jun 12, 2026Updated 4 months ago