idptools / parrotLinks
Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
☆20Updated 2 months ago
Alternatives and similar repositories for parrot
Users that are interested in parrot are comparing it to the libraries listed below
Sorting:
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆107Updated 2 weeks ago
- ☆47Updated 9 months ago
- Predict the structure of immune receptor proteins☆56Updated 11 months ago
- Neural networks for deep mutational scanning data☆69Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- ☆53Updated 2 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆107Updated last year
- ☆30Updated 5 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 3 months ago
- Set of useful HADDOCK utility scripts☆55Updated 3 weeks ago
- Interactive Python notebooks for PDBe API training☆57Updated 3 weeks ago
- PLM based active learning model for protein engineering☆84Updated last year
- ☆37Updated 3 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆58Updated 6 months ago
- A Python 3 version of the protein descriptor package propy☆46Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- Tools for annotation, processing and ML for antibody sequences☆32Updated this week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆64Updated last year
- ☆84Updated last month
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆68Updated 10 months ago
- Predict the binding affinity of protein-protein complexes from structural data☆149Updated 2 weeks ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆105Updated last month
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Python package to manage protein structures and their annotations☆44Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year