Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
☆21May 7, 2026Updated 3 months ago
Alternatives and similar repositories for parrot
Users that are interested in parrot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A machine learning based protein disorder predictor.☆32Jul 9, 2026Updated last month
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- A python package for generating disordered sequences and disorder sequence variants.☆27Jul 29, 2026Updated last month
- Next generation sequence parameter library for proteins☆44Updated this week
- Deep Neural Networks for Analysing NMR time domain data☆14Aug 4, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated last year
- Interactive NMR peak deconvolution☆20Sep 17, 2025Updated 11 months ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 4 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆26May 15, 2023Updated 3 years ago
- Open source short linear motif discovery and sequence analysis☆29Sep 19, 2024Updated last year
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆20Apr 12, 2019Updated 7 years ago
- MBP: Multi-task Bioassay Pre-training for Protein-Ligand Binding Affinity Prediction☆21Oct 15, 2024Updated last year
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆13Dec 29, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆27Aug 13, 2026Updated 2 weeks ago
- Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences☆15Dec 9, 2016Updated 9 years ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Aug 13, 2026Updated 2 weeks ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Aug 7, 2020Updated 6 years ago
- some generic (but hopefully still useful) recommendations on writing your thesis☆11Mar 24, 2023Updated 3 years ago
- ☆12May 16, 2020Updated 6 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 7 years ago
- A manually curated lists of software, publications and other resources related to the analysis of HDX-MS data.☆12Dec 15, 2025Updated 8 months ago
- programs and scripts for molecular structure analysis☆13Mar 26, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆24May 22, 2025Updated last year
- Notes for a workshop on using git and github☆10Dec 13, 2019Updated 6 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆16Jul 19, 2025Updated last year
- Multi-Teacher Distillation for Protein embedding☆13May 31, 2024Updated 2 years ago
- Cluster up to millions of peptide sequences on shared sequence motifs.☆13Oct 1, 2018Updated 7 years ago
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆39Nov 9, 2023Updated 2 years ago
- ☆11Jul 15, 2021Updated 5 years ago
- [ICML 2024] Code for the paper "MoE-RBench: Towards Building Reliable Language Models with Sparse Mixture-of-Experts"☆11Jul 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [ICML 2023] Meta-SAGE: Scale Meta-Learning Scheduled Adaptation with Guided Exploration for Mitigating Scale Shift on Combinatorial Optim…☆11Dec 19, 2023Updated 2 years ago
- Docker for Bioinformatics☆20Aug 20, 2026Updated last week
- ☆18Sep 4, 2022Updated 3 years ago
- Convert PDB residues to their Uniprot equivalents☆17Mar 31, 2020Updated 6 years ago
- Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons …☆20Sep 14, 2023Updated 2 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- ☆19Feb 25, 2026Updated 6 months ago