Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
☆21May 7, 2026Updated 2 months ago
Alternatives and similar repositories for parrot
Users that are interested in parrot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A machine learning based protein disorder predictor.☆31Jul 9, 2026Updated last week
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- A python package for generating disordered sequences and disorder sequence variants.☆18Jun 2, 2026Updated last month
- Deep Neural Networks for Analysing NMR time domain data☆14Jun 8, 2026Updated last month
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interactive NMR peak deconvolution☆20Sep 17, 2025Updated 10 months ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- MBP: Multi-task Bioassay Pre-training for Protein-Ligand Binding Affinity Prediction☆21Oct 15, 2024Updated last year
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆26May 15, 2023Updated 3 years ago
- Open source short linear motif discovery and sequence analysis☆29Sep 19, 2024Updated last year
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆20Apr 12, 2019Updated 7 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆27Apr 9, 2026Updated 3 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Apr 10, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Aug 7, 2020Updated 5 years ago
- some generic (but hopefully still useful) recommendations on writing your thesis☆11Mar 24, 2023Updated 3 years ago
- ☆12May 16, 2020Updated 6 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 7 years ago
- A manually curated lists of software, publications and other resources related to the analysis of HDX-MS data.☆12Dec 15, 2025Updated 7 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23May 22, 2025Updated last year
- Notes for a workshop on using git and github☆10Dec 13, 2019Updated 6 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- ☆25Jan 9, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Cluster up to millions of peptide sequences on shared sequence motifs.☆13Oct 1, 2018Updated 7 years ago
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆39Nov 9, 2023Updated 2 years ago
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- ☆11Jul 15, 2021Updated 5 years ago
- [ICML 2023] Meta-SAGE: Scale Meta-Learning Scheduled Adaptation with Guided Exploration for Mitigating Scale Shift on Combinatorial Optim…☆10Dec 19, 2023Updated 2 years ago
- Docker for Bioinformatics☆20Jul 5, 2026Updated 2 weeks ago
- Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons …☆20Sep 14, 2023Updated 2 years ago
- ☆17Sep 4, 2022Updated 3 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Feb 25, 2026Updated 4 months ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 3 years ago
- Structure-Informed Protein Language Model☆39Feb 15, 2024Updated 2 years ago
- ☆20Jun 14, 2026Updated last month
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆15Dec 2, 2023Updated 2 years ago
- An Online Tool for the Real-Time Kinetic Analysis of Binding Events☆14Jul 13, 2025Updated last year
- ☆12Dec 4, 2023Updated 2 years ago