kolibril13 / ipyMolecularNodes

Related projects ⓘ

Alternatives and complementary repositories for ipyMolecularNodes

• jssweller / DrugHIVE
  DrugHIVE: Structure-based drug design with a deep hierarchical generative model
  ☆62Updated last week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆71Updated 2 months ago
• pstansfeld / MemProtMD
  ☆31Updated 3 months ago
• tiwarylab / GrASP
  Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention
  ☆50Updated 2 weeks ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆49Updated this week
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆41Updated 2 months ago
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆37Updated 9 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆23Updated 2 weeks ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆25Updated this week
• hgbrian / biomodals
  bioinformatics tools running on modal
  ☆55Updated this week
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆22Updated last month
• KULL-Centre / _2023_Tesei_IDRome
  ☆32Updated last month
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆49Updated 2 weeks ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆36Updated 8 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆70Updated this week
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆32Updated 2 months ago
• chupvl / awesome-ls-ventures
  Awesome list of the data and AI/ML related projects with direct Life Science Companies participation
  ☆31Updated last month
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆60Updated 2 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆35Updated 2 weeks ago
• mirabdi / PDAnalysis
  ☆24Updated 11 months ago
• aethertier / secstructartist
  A python module to plot secondary structure schemes
  ☆25Updated last year
• bene837 / af2seq
  ☆38Updated last month
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆53Updated last month
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆103Updated 3 weeks ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆44Updated 3 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆37Updated 5 months ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆49Updated 3 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…
  ☆81Updated 3 weeks ago
• bwicky / oligomer_hallucination
  ☆35Updated 10 months ago
• KULL-Centre / CALVADOS
  ☆29Updated this week