kolibril13 / ipyMolecularNodes
molecular plots in Jupyter, powererd by Blender Geometry Nodes
☆55Updated last year
Alternatives and similar repositories for ipyMolecularNodes:
Users that are interested in ipyMolecularNodes are comparing it to the libraries listed below
- Structure prediction of alternative protein conformations☆75Updated last month
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆56Updated 5 months ago
- Fast and accurate molecular docking with an AI pose scoring function☆37Updated last year
- Plugin for folding sequences directly in PyMOL☆27Updated 4 months ago
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆50Updated 3 weeks ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆52Updated last month
- Source code and examples for AlphaFold Unmasked☆60Updated this week
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆83Updated last month
- ☆38Updated 2 weeks ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆68Updated 7 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆53Updated 3 weeks ago
- A benchmark for 3D biomolecular structure prediction models☆56Updated 3 months ago
- Protein Structure Analysis☆54Updated 3 weeks ago
- A model-context-protocol server for molecules.☆66Updated last week
- ☆65Updated 3 weeks ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆65Updated 3 weeks ago
- ☆31Updated last year
- Recursion's molecular foundation model☆43Updated 6 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆91Updated 8 months ago
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- ☆52Updated last week
- Machine learning accelerated docking screens☆48Updated 2 months ago
- A Unified Approach to Protein Engineering☆41Updated 9 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆66Updated 3 weeks ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆43Updated last month
- It's a package for evaluation of predicted poses, right?☆46Updated this week
- Files and utilities for protein-emoji☆21Updated 2 years ago
- PyMOL-wasm port's binary and html/javascript code☆23Updated last year
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- ☆36Updated last year