Alternatives and similar repositories for ipyMolecularNodes:

Users that are interested in ipyMolecularNodes are comparing it to the libraries listed below

• jssweller / DrugHIVE
  DrugHIVE: Structure-based drug design with a deep hierarchical generative model
  ☆68Updated 3 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆74Updated 5 months ago
• tiwarylab / GrASP
  Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention
  ☆49Updated 3 months ago
• pstansfeld / MemProtMD
  ☆33Updated last month
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆56Updated 2 months ago
• BioinfoMachineLearning / FlowDock
  Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)
  ☆72Updated 3 weeks ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆88Updated this week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆52Updated 2 months ago
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆55Updated 3 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 3 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆47Updated this week
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆67Updated 5 months ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆53Updated last month
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆37Updated last year
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆65Updated last week
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆92Updated last month
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆77Updated 3 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated 11 months ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆62Updated 3 months ago
• ullahsamee / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆26Updated 2 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆29Updated 2 weeks ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆113Updated last month
• ncbi / SSDraw
  ☆82Updated last year
• mirabdi / PDAnalysis
  ☆28Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆33Updated 2 weeks ago
• hgbrian / biomodals
  bioinformatics tools running on modal
  ☆83Updated this week
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆108Updated this week
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆144Updated 5 months ago