hgbrian / biomodalsLinks
bioinformatics tools running on modal
☆90Updated last week
Alternatives and similar repositories for biomodals
Users that are interested in biomodals are comparing it to the libraries listed below
Sorting:
- Sandbox for Deep-Learning based Computational Protein Design☆112Updated 2 weeks ago
- Directed evolution of proteins in sequence space with gradients☆86Updated 10 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆55Updated 10 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆119Updated last month
- Predict the structure of immune receptor proteins☆139Updated 4 months ago
- Plugin for folding sequences directly in PyMOL☆97Updated 3 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆122Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆92Updated last week
- Improved antibody structure-based design using inverse folding☆120Updated 3 weeks ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆54Updated 2 months ago
- ☆40Updated 4 months ago
- Source code and examples for AlphaFold Unmasked☆66Updated 2 weeks ago
- ☆81Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆72Updated last year
- PLM based active learning model for protein engineering☆80Updated 10 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 5 months ago
- ☆65Updated 3 months ago
- multi-objective protein design☆51Updated this week
- ☆112Updated this week
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆56Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆71Updated this week
- Active Learning-Assisted Directed Evolution for Protein Engineering☆57Updated 6 months ago
- Learning the language of protein-protein interactions☆73Updated last week
- Structure prediction of alternative protein conformations☆75Updated 3 months ago
- ☆67Updated 2 months ago
- AlphaBind code + model accompanying pre-print☆56Updated 5 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆56Updated 7 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆75Updated last week
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆35Updated last week