Alternatives and similar repositories for biomodals

Users that are interested in biomodals are comparing it to the libraries listed below

• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆112Updated 2 weeks ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 10 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated 10 months ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆119Updated last month
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆139Updated 4 months ago
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆97Updated 3 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆122Updated last month
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆92Updated last week
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆120Updated 3 weeks ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆54Updated 2 months ago
• AbSciBio / igdesign
  ☆40Updated 4 months ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆66Updated 2 weeks ago
• Kuhlman-Lab / evopro
  ☆81Updated 2 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆72Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆80Updated 10 months ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆34Updated 5 months ago
• ELELAB / RosettaDDGPrediction
  ☆65Updated 3 months ago
• escalante-bio / boltz-binder-design
  multi-objective protein design
  ☆51Updated this week
• yehlincho / BoltzDesign1
  ☆112Updated this week
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 4 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆56Updated 3 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆71Updated this week
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆57Updated 6 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆73Updated last week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆75Updated 3 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆67Updated 2 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆56Updated 5 months ago
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆56Updated 7 months ago
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆75Updated last week
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆35Updated last week