casperg92 / MaSIF_colab
dMaSIF implementation for google colab
☆32Updated 2 years ago
Alternatives and similar repositories for MaSIF_colab:
Users that are interested in MaSIF_colab are comparing it to the libraries listed below
- Structure prediction of alternative protein conformations☆75Updated 2 months ago
- ☆66Updated last month
- Efficient manipulation of protein structures in Python☆53Updated 6 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- ☆46Updated 6 months ago
- Fast and accurate molecular docking with an AI pose scoring function☆37Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆39Updated 5 months ago
- An antibody-specific language model focusing on NGL prediction☆27Updated 8 months ago
- ☆76Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆70Updated 6 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆35Updated 3 weeks ago
- ☆34Updated 7 months ago
- ☆38Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- ☆35Updated last year
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆34Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 3 months ago
- ☆32Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 11 months ago
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated this week
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆53Updated 2 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- Source code and examples for AlphaFold Unmasked☆62Updated 2 weeks ago