Alternatives and similar repositories for MaSIF_colab

Users that are interested in MaSIF_colab are comparing it to the libraries listed below

• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆42Updated last year
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆33Updated 3 years ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 10 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 7 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 9 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• Exscientia / abodybuilder3
  ☆73Updated last year
• bwicky / oligomer_hallucination
  ☆36Updated 2 years ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆90Updated 6 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 8 months ago
• stemylonas / DeepSurf
  A surface-based deep learning approach for the prediction of ligand binding sites on proteins
  ☆43Updated 2 years ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated last month
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆58Updated 2 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• feiglab / idpgan
  ☆50Updated 11 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆70Updated 9 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated 3 weeks ago
• Minys233 / Dynaformer
  ☆34Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆50Updated 2 weeks ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated last month
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆40Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆67Updated 7 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 6 months ago
• zzhangzzhang / pLMs-interpretability
  ☆32Updated last year
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year