wegnerce / taxomiasLinks
an easy to use implementation of the NCBI taxonomy database for daily use
☆9Updated 4 years ago
Alternatives and similar repositories for taxomias
Users that are interested in taxomias are comparing it to the libraries listed below
Sorting:
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- ☆15Updated 7 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- ☆10Updated 7 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆32Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- high-throughput primer design and graphical visualization☆9Updated 8 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Updated 8 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- comparative genome dot plot viewer☆9Updated 6 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- ☆32Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 2 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago