siheming / mspypelineLinks
Package to analyze Mass Spec Data
☆12Updated last year
Alternatives and similar repositories for mspypeline
Users that are interested in mspypeline are comparing it to the libraries listed below
Sorting:
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 5 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- Analysis platform for large-scale dose-dependent data☆25Updated last month
- ☆29Updated 3 years ago
- ☆62Updated last year
- MS/MS prediction for peptides☆23Updated 4 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated last month
- Collisional cross-section prediction for modified and multiconformational peptides☆12Updated 2 months ago
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆70Updated 2 weeks ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆26Updated 2 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 2 weeks ago
- ☆17Updated 5 years ago
- Model-based Analysis of Protein Degradability☆10Updated 3 years ago
- Metabolome Annotation Workflow☆25Updated last year
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆38Updated 3 weeks ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆28Updated 6 months ago
- Generate Dose-Response Curves in Python☆9Updated 2 weeks ago
- Tools for analysis of Mass Spectrometry data using the Wasserstein metric☆17Updated 7 months ago
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated last year
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Updated 5 years ago