Alternatives and similar repositories for protein-inference:

Users that are interested in protein-inference are comparing it to the libraries listed below

• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆32Updated last week
• gtluu / timsconvert
  ☆37Updated last month
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆23Updated last week
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆52Updated 3 weeks ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• MannLabs / alphadia
  modular & open DIA search
  ☆67Updated this week
• abdrakhimov1 / Biosaur
  ☆14Updated 2 years ago
• MannLabs / timsrust
  ☆25Updated 2 months ago
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆21Updated 3 months ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated this week
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆25Updated last week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆42Updated this week
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆67Updated last week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated last month
• mobiusklein / ms_peak_picker
  A small library to provide peak picking for software processing mass spectrometry data
  ☆21Updated 4 months ago
• rusteomics / mzcore
  A Rust library for parsing ProForma peptides and matching them against MS spectra, formally known as rustyms
  ☆27Updated this week
• OpenMS / pyopenms-docs
  pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
  ☆48Updated 2 weeks ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated last week
• pFindStudio / pGlyco3
  ☆18Updated 2 months ago
• levitsky / identipy
  ☆10Updated 6 months ago
• SlavovLab / DART-ID
  DART-ID: retention time alignment and peptide identification confidence updates
  ☆16Updated last month
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated 9 months ago
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆127Updated this week
• BlaisProteomics / multiplierz
  The Multiplierz Proteomics Library
  ☆24Updated 11 months ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆63Updated this week
• EuBIC / EuBIC2023
  EuBIC 2023 developer's meeting
  ☆13Updated 2 years ago