PeterZZQ / CeSpGRN
CeSpGRN: Inferring cell specific GRN using single-cell gene expression data
☆21Updated 11 months ago
Alternatives and similar repositories for CeSpGRN:
Users that are interested in CeSpGRN are comparing it to the libraries listed below
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 2 months ago
- ☆40Updated 4 months ago
- ☆46Updated 2 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆64Updated last month
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- ☆45Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆72Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆41Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated last year
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆44Updated last month
- Multiview Intercellular SpaTial modeling framework☆52Updated last year
- Reproducing result from the paper☆33Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆71Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated last month
- ☆31Updated 8 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆50Updated 7 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago