CFSAN-Biostatistics / vcftoolzLinks
Tools for working with Variant Call Format files.
☆12Updated 2 years ago
Alternatives and similar repositories for vcftoolz
Users that are interested in vcftoolz are comparing it to the libraries listed below
Sorting:
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- mtDNA Variant Caller☆34Updated 10 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- ☆13Updated 8 years ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆18Updated last year
- Fully automated generation of UCSC assembly hubs☆34Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Fast sequencing data quality metrics☆28Updated last month
- Structural variant (SV) analysis tools☆38Updated last year
- Multithreaded read analysis☆19Updated last week
- ☆32Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Master of Pores 2☆23Updated 10 months ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- ☆49Updated 11 months ago