CFSAN-Biostatistics / vcftoolzLinks
Tools for working with Variant Call Format files.
☆12Updated 2 years ago
Alternatives and similar repositories for vcftoolz
Users that are interested in vcftoolz are comparing it to the libraries listed below
Sorting:
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated 7 months ago
- Fast sequencing data quality metrics☆26Updated last week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Documentation for vcfR☆11Updated 3 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆28Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆17Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Master of Pores 2☆23Updated 6 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Evolutionary Transcriptomics with R☆43Updated last week
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- python plotly Circos from VCF☆36Updated 11 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago