dalmolingroup / euryaleLinks
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
☆14Updated 3 months ago
Alternatives and similar repositories for euryale
Users that are interested in euryale are comparing it to the libraries listed below
Sorting:
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆104Updated 3 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆80Updated last week
- ☆83Updated last year
- Reorients assembled microbial sequences☆121Updated 3 months ago
- Scripts and libraries for Environmental Genomics☆39Updated 5 months ago
- Bioinformatics Tools☆88Updated this week
- Rapid determination of appropriate reference genomes.☆98Updated 5 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- ☆78Updated 4 years ago
- Interactive quality assessment of genome assemblies☆102Updated 2 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- Development version of Easyfig☆98Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 10 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆98Updated 3 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆89Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- Microbiome classification pipeline☆66Updated 2 months ago
- ARG normalization by mapping to the ARO ontology.☆58Updated this week
- Bioinformatics tool for Locus Visualisation☆111Updated 2 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆86Updated 11 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago