A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
☆14Apr 16, 2025Updated last year
Alternatives and similar repositories for euryale
Users that are interested in euryale are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Apr 5, 2021Updated 5 years ago
- starmie: plotting and inference for population structure models☆15Sep 20, 2018Updated 8 years ago
- Pan-genome Analysis☆14May 4, 2025Updated last year
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆39Updated this week
- Metagenomic pipeline managed by snakemake☆18Sep 18, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Github pages based template for hackathons☆13Sep 28, 2026Updated 2 weeks ago
- ☆10Sep 17, 2026Updated 3 weeks ago
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆27Jan 20, 2026Updated 8 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆31Apr 27, 2026Updated 5 months ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 7 months ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 5 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 8 months ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Animations of tidyverse verbs using R, the tidyverse, and gganimate☆13Sep 22, 2019Updated 7 years ago
- Test data to be used for automated testing with the nf-core pipelines☆163Updated this week
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- YAMP: Yet Another Metagenomic Pipeline☆62Jun 5, 2023Updated 3 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated 2 weeks ago
- Trabalho da 1 unidade da disciplina de Ciencia de dados I.☆34Sep 24, 2018Updated 8 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- A healthy human gut genome collection☆26Aug 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The data API server for outbreak.info☆11Jan 27, 2025Updated last year
- ☆11Mar 5, 2025Updated last year
- ☆13Mar 12, 2020Updated 6 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated 2 months ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- A crate for working with the Task Execution Service (TES) specification.☆14Oct 1, 2026Updated last week
- ☆18Mar 11, 2024Updated 2 years ago
- A bot to add citation data from OpenCitations to Wikidata☆12May 23, 2023Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated last year
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 8 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 9 years ago
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆80Aug 14, 2024Updated 2 years ago