FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
☆40Nov 11, 2023Updated 2 years ago
Alternatives and similar repositories for FAVITES
Users that are interested in FAVITES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Updated this week
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Updated this week
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆21Updated this week
- ☆20Jun 4, 2026Updated last month
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Reconstruction of transmission trees using genomic data☆72Jul 14, 2026Updated 2 weeks ago
- ☆12May 12, 2019Updated 7 years ago
- Data and statistical models for biomarker shedding.☆17Updated this week
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 3 months ago
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last month
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 4 years ago
- ☆13Updated this week
- ☆14Jun 26, 2026Updated last month
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated last week
- Efficient phylogenetic clustering of viral sequences☆100Nov 19, 2025Updated 8 months ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 3 years ago
- Sequence simulator☆55Feb 3, 2025Updated last year
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 7 months ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- notes and materials from dbug meetings☆10Sep 26, 2018Updated 7 years ago
- TN93 fast distance calculator☆20May 10, 2026Updated 2 months ago
- Implementation of the TreeShrink problem☆57May 28, 2026Updated 2 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 7 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Sketch-based surveillance platform☆14Updated this week
- egonetR is continued as egor☆11Sep 22, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Mar 5, 2022Updated 4 years ago
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆14Oct 18, 2021Updated 4 years ago
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated last month
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 4, 2026Updated 2 months ago
- Fast viral consensus genome reconstruction☆27Jun 19, 2026Updated last month