FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
☆40Nov 11, 2023Updated 2 years ago
Alternatives and similar repositories for FAVITES
Users that are interested in FAVITES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 11 years ago
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 2 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆250Updated this week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆21Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆19Oct 23, 2025Updated 5 months ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- ☆12May 12, 2019Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆30Dec 5, 2019Updated 6 years ago
- Data and statistical models for biomarker shedding.☆15Feb 23, 2026Updated last month
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated last month
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Jun 26, 2022Updated 3 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22Mar 10, 2026Updated 2 weeks ago
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated this week
- ☆13Mar 20, 2026Updated last week
- ☆21Mar 19, 2025Updated last year
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Mar 14, 2026Updated last week
- Efficient phylogenetic clustering of viral sequences☆94Nov 19, 2025Updated 4 months ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Sequence simulator☆55Feb 3, 2025Updated last year
- ORFFinder in Python☆15Aug 24, 2024Updated last year
- ☆25Jan 4, 2024Updated 2 years ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆12Dec 15, 2025Updated 3 months ago
- Implementation of the TreeShrink problem☆55Sep 13, 2024Updated last year
- notes and materials from dbug meetings☆10Sep 26, 2018Updated 7 years ago
- TN93 fast distance calculator☆19Jul 16, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Examples used for useR! 2016 knitr tutorial☆15Jul 4, 2016Updated 9 years ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 3 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.☆16Updated this week
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- macOS system sounds in multiple formats (including Base64.)☆23Apr 14, 2022Updated 3 years ago