feldman4 / OpticalPooledScreensLinks
Code and examples for optical pooled screens (updated protocol).
☆13Updated last year
Alternatives and similar repositories for OpticalPooledScreens
Users that are interested in OpticalPooledScreens are comparing it to the libraries listed below
Sorting:
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆48Updated 3 weeks ago
- CZ CELLxGENE Discover Census☆110Updated this week
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- Multi-modal single cell analysis pipelines☆59Updated last week
- Examples and code for optical pooled screens☆10Updated 2 years ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆109Updated last week
- ☆87Updated 2 months ago
- ☆26Updated 5 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆63Updated 3 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 5 months ago
- ☆13Updated 2 years ago
- ☆45Updated 2 weeks ago
- ☆44Updated last year
- Using BCR and expression for sequence embedding☆25Updated 2 weeks ago
- ☆61Updated last week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- ☆24Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- Bring your single-cell data to life☆88Updated 2 weeks ago
- ☆56Updated 5 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- ☆19Updated last year
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆31Updated 11 months ago
- software to detect doublets☆95Updated 10 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆31Updated 3 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated last month