VarFish: comprehensive DNA variant analysis for diagnostics and research
☆52Apr 4, 2026Updated last week
Alternatives and similar repositories for varfish-server
Users that are interested in varfish-server are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- REEV: Explanation and Evaluation of Variants☆11Mar 30, 2026Updated last week
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 8 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Apr 3, 2026Updated last week
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A port of biocommons/hgvs to the Rust programming language☆17Updated this week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆39Mar 31, 2026Updated last week
- Public repository for VariantValidator project☆80Updated this week
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- VCF visualization interface☆178Updated this week
- ☆11Jul 13, 2018Updated 7 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Mar 16, 2026Updated 3 weeks ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- SODAR Core: A Django-based framework for building scientific data management web apps☆13Apr 1, 2026Updated last week
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Short-read and long-read sequencing tools for diagnostics☆175Updated this week
- structural variant database software☆48Feb 16, 2026Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Medical Genetics Sequence Analysis Pipelines☆88Updated this week
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 months ago
- The nimble & robust variant annotator☆193Apr 25, 2024Updated last year
- A phenotype-based tool for variant prioritization in WES and WGS data☆42Nov 21, 2022Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 3 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆92Sep 16, 2025Updated 6 months ago
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- Semantic data model of the set of common data elements for rare disease registration☆12Oct 26, 2023Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated this week
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆26Mar 26, 2026Updated 2 weeks ago