varfish-org / varfish-serverLinks
VarFish: comprehensive DNA variant analysis for diagnostics and research
☆51Updated this week
Alternatives and similar repositories for varfish-server
Users that are interested in varfish-server are comparing it to the libraries listed below
Sorting:
- FusionInspector code☆58Updated last month
- Generic human DNA variant annotation pipeline☆58Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last year
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- dbVar☆40Updated 3 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Public repository for VariantValidator project☆77Updated 2 weeks ago
- mtDNA Variant Caller☆34Updated 10 months ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last month
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆29Updated 4 months ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated 2 weeks ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆91Updated this week
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- Somatic workflow for Kids-First☆15Updated 4 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Example project for integrating igv.js and flask☆26Updated 5 months ago
- Website to analyze conflicting assertions in ClinVar☆19Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 2 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 2 months ago
- Tumor Mutational Burden☆62Updated 3 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year