VarFish: comprehensive DNA variant analysis for diagnostics and research
☆54Oct 24, 2026Updated last week
Alternatives and similar repositories for varfish-server
Users that are interested in varfish-server are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SNAPPY Nucleic Acid Processing in Python☆10Oct 26, 2026Updated last week
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated 6 months ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 9 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Structural variant benchmark☆25Mar 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 4 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- VCF visualization interface☆184Updated this week
- The nimble & robust variant annotator☆196Apr 20, 2026Updated 6 months ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- Public repository for VariantValidator project☆83Oct 5, 2026Updated 3 weeks ago
- Variant catalogue pipeline☆26Jan 30, 2026Updated 9 months ago
- Pathogenicity prediction and prioritization of genetic variants.☆20Sep 21, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A port of biocommons/hgvs to the Rust programming language☆18Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Pedigree drawing with ease☆24Feb 10, 2022Updated 4 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- Rust implmentation of VCF parser☆27Oct 2, 2022Updated 4 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Updated this week
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Short-read and long-read sequencing tools for diagnostics☆185Updated this week
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 22, 2026Updated last week
- Generate an enhanced VCF files from ClinVar XML Full releases☆18Jul 21, 2026Updated 3 months ago
- ☆11Jul 13, 2018Updated 8 years ago
- ☆11Aug 29, 2022Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- SODAR Core: A Django-based framework for building scientific data management web apps☆13Updated this week
- A high-performance HGVS variant nomenclature parser and normalizer written in Rust☆31Oct 26, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Website to analyze conflicting assertions in ClinVar☆20Mar 16, 2026Updated 7 months ago
- ☆19Mar 14, 2022Updated 4 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Oct 24, 2026Updated last week
- ☆12Jun 29, 2026Updated 4 months ago
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated 2 years ago
- Svirlpool: structural variant detection from long read sequencing by local assembly☆10Oct 11, 2026Updated 3 weeks ago