Alternatives and similar repositories for ugene

Users that are interested in ugene are comparing it to the libraries listed below

• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆248Updated last week
• igvteam / igv
  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
  ☆676Updated this week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆325Updated this week
• sanger-pathogens / Artemis
  Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…
  ☆246Updated 11 months ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆177Updated this week
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆597Updated 9 months ago
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆299Updated this week
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆243Updated last month
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆613Updated 2 years ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆411Updated 4 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆186Updated last week
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆376Updated last year
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆435Updated this week
• genometools / genometools
  GenomeTools genome analysis system.
  ☆309Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆617Updated last year
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆477Updated last week
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆161Updated last month
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆487Updated last year
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆280Updated 4 months ago
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆507Updated last year
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆468Updated last week
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆498Updated this week
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆675Updated last week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆288Updated 7 months ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆523Updated 3 months ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆440Updated last year
• bioSyntax / bioSyntax
  Syntax highlighting for computational biology
  ☆265Updated 2 years ago
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆675Updated 2 years ago
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆301Updated 4 months ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆348Updated 3 months ago