Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
☆755Jul 4, 2026Updated 2 weeks ago
Alternatives and similar repositories for igv
Users that are interested in igv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆729Jul 1, 2026Updated 2 weeks ago
- bedtools - the swiss army knife for genome arithmetic☆1,041Jun 10, 2026Updated last month
- Official code repository for GATK versions 4 and up☆1,976Updated this week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,068Jun 13, 2026Updated last month
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,929Jul 10, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,758Jun 20, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- C++ API & command-line toolkit for working with BAM data☆431May 18, 2025Updated last year
- Tools to process and analyze deep sequencing data.☆762Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆540Jan 27, 2026Updated 5 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆880Jul 13, 2026Updated last week
- The next version of bwa-mem☆851Oct 15, 2025Updated 9 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,400Jul 10, 2026Updated last week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆876Apr 20, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- lumpy: a general probabilistic framework for structural variant discovery☆344Feb 22, 2026Updated 4 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆899Updated this week
- C library for high-throughput sequencing data formats☆939Jul 9, 2026Updated last week
- A fast and sensitive gapped read aligner☆803Jun 1, 2026Updated last month
- SRA Tools☆1,354Updated this week
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 9 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆781Jul 7, 2026Updated 2 weeks ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,547Jun 1, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆527Updated this week
- BWK awk modified for biological data☆640Aug 11, 2022Updated 3 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 3 months ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆561May 15, 2025Updated last year
- RNA-seq aligner☆2,224Mar 18, 2025Updated last year
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆565Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- Spliced read mapper for RNA-Seq☆92Jul 9, 2023Updated 3 years ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆708Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆490Jul 7, 2026Updated 2 weeks ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆682Mar 20, 2026Updated 4 months ago
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- IGV Web App☆127Jul 1, 2026Updated 2 weeks ago
- BEDOPS: high-performance genomic feature operations☆373Apr 29, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,479Jun 29, 2026Updated 3 weeks ago