Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
☆742Jun 4, 2026Updated this week
Alternatives and similar repositories for igv
Users that are interested in igv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆721Jun 1, 2026Updated last week
- bedtools - the swiss army knife for genome arithmetic☆1,038Mar 11, 2025Updated last year
- Official code repository for GATK versions 4 and up☆1,962Updated this week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,068Apr 25, 2026Updated last month
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,914May 21, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,748Mar 22, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,197May 19, 2026Updated 3 weeks ago
- C++ API & command-line toolkit for working with BAM data☆430May 18, 2025Updated last year
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆538Jan 27, 2026Updated 4 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆870Jun 3, 2026Updated last week
- The next version of bwa-mem☆837Oct 15, 2025Updated 7 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,374Jun 1, 2026Updated last week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆870Apr 20, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆894Jun 3, 2026Updated last week
- C library for high-throughput sequencing data formats☆923Updated this week
- A fast and sensitive gapped read aligner☆793Jun 1, 2026Updated last week
- Structural variant and indel caller for mapped sequencing data☆466Oct 11, 2025Updated 7 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆776May 6, 2026Updated last month
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- SRA Tools☆1,344Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,541Jun 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆522Updated this week
- BWK awk modified for biological data☆641Aug 11, 2022Updated 3 years ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆558May 15, 2025Updated last year
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- RNA-seq aligner☆2,202Mar 18, 2025Updated last year
- Spliced read mapper for RNA-Seq☆92Jul 9, 2023Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆856May 2, 2026Updated last month
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆557Jun 1, 2026Updated last week
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆706Jun 4, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆484Apr 10, 2026Updated 2 months ago
- IGV Web App☆125Jun 1, 2026Updated last week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆680Mar 20, 2026Updated 2 months ago
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- BEDOPS: high-performance genomic feature operations☆369Apr 29, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,459May 20, 2026Updated 3 weeks ago