Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
☆738May 19, 2026Updated this week
Alternatives and similar repositories for igv
Users that are interested in igv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆720May 13, 2026Updated last week
- bedtools - the swiss army knife for genome arithmetic☆1,035Mar 11, 2025Updated last year
- Official code repository for GATK versions 4 and up☆1,945May 14, 2026Updated last week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,063Apr 25, 2026Updated 3 weeks ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,899May 14, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,737Mar 22, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,183Apr 25, 2026Updated 3 weeks ago
- C++ API & command-line toolkit for working with BAM data☆429May 18, 2025Updated last year
- Tools to process and analyze deep sequencing data.☆760Jul 23, 2025Updated 9 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆537Jan 27, 2026Updated 3 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆866Updated this week
- The next version of bwa-mem☆831Oct 15, 2025Updated 7 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Apr 20, 2026Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,361Apr 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆890May 10, 2026Updated last week
- C library for high-throughput sequencing data formats☆922Updated this week
- A fast and sensitive gapped read aligner☆791Mar 7, 2026Updated 2 months ago
- Structural variant and indel caller for mapped sequencing data☆465Oct 11, 2025Updated 7 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆776May 6, 2026Updated 2 weeks ago
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- SRA Tools☆1,338May 15, 2026Updated last week
- Toolkit for processing sequences in FASTA/Q formats☆1,540Jun 1, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆515Updated this week
- BWK awk modified for biological data☆639Aug 11, 2022Updated 3 years ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆556May 15, 2025Updated last year
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- RNA-seq aligner☆2,196Mar 18, 2025Updated last year
- Spliced read mapper for RNA-Seq☆92Jul 9, 2023Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆848May 2, 2026Updated 2 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆548Apr 13, 2026Updated last month
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆705Apr 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆478Apr 10, 2026Updated last month
- IGV Web App☆125May 6, 2026Updated 2 weeks ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆678Mar 20, 2026Updated 2 months ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- BEDOPS: high-performance genomic feature operations☆368Apr 29, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,450May 14, 2026Updated last week