Official git repository for Biopython (originally converted from CVS)
☆5,019May 11, 2026Updated this week
Alternatives and similar repositories for biopython
Users that are interested in biopython are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A curated list of awesome Bioinformatics libraries and software.☆4,019Apr 7, 2026Updated last month
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,694Mar 19, 2026Updated last month
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆1,203May 9, 2026Updated last week
- Working with molecular structures in pandas DataFrames☆751Aug 1, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,355Apr 24, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆890Updated this week
- Source of biopython.org website, migrated from MediaWiki☆163Apr 7, 2026Updated last month
- Official code repository for GATK versions 4 and up☆1,945Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,452Updated this week
- Open-source foundation of the user-sponsored PyMOL molecular visualization system.☆1,674May 4, 2026Updated last week
- Data intensive science for everyone.☆1,771Updated this week
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,046Apr 16, 2026Updated last month
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,737Mar 22, 2025Updated last year
- Conda recipes for the bioconda channel.☆1,816Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,893Apr 30, 2026Updated 2 weeks ago
- Making Protein folding accessible to all!☆2,756Apr 29, 2026Updated 2 weeks ago
- Path to a free self-taught education in Bioinformatics!☆6,849Apr 8, 2024Updated 2 years ago
- Open source code for AlphaFold 2.☆14,587Apr 22, 2026Updated 3 weeks ago
- A comprehensive library for computational molecular biology☆946Apr 27, 2026Updated 2 weeks ago
- A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.☆228Apr 11, 2020Updated 6 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,450May 7, 2026Updated last week
- Scripts to download genomes from the NCBI FTP servers☆1,077Apr 7, 2026Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,540Jun 1, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A DSL for data-driven computational pipelines☆3,382Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,033Mar 11, 2025Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,732May 2, 2026Updated 2 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,173Apr 25, 2026Updated 3 weeks ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,554Updated this week
- Remote protein homology detection suite.☆619Aug 12, 2025Updated 9 months ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆878May 6, 2026Updated last week
- A fast and sensitive gapped read aligner☆790Mar 7, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accelerated BLAST compatible local sequence aligner.☆1,291Updated this week
- SRA Tools☆1,338Updated this week
- Automatically exported from code.google.com/p/cdhit☆727Oct 11, 2022Updated 3 years ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆689Jul 2, 2025Updated 10 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆863May 7, 2026Updated last week
- Efficient pythonic random access to fasta subsequences☆486Mar 19, 2026Updated last month
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,062Apr 25, 2026Updated 3 weeks ago