jg-you / complex-coinfection-inference
Bayesian inference of effective contagion models from population level data, with STAN
☆14Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for complex-coinfection-inference
- Uncertainty and causal emergence in complex networks☆106Updated 3 years ago
- C++ implementation of a MCMC sampler for the (canonical) SBM☆11Updated 5 years ago
- Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics☆25Updated 6 years ago
- A package to represent high-order relationships between objects of any type☆34Updated last year
- Code for "Reconstruction of plant--pollinator networks from observational data"☆18Updated 2 years ago
- Noisy network measurement with stan☆53Updated 3 years ago
- ☆48Updated 5 years ago
- An information-theoretic, all-scales approach to comparing networks☆29Updated 2 years ago
- Quantifying structural dissimilarities in networks☆43Updated last year
- Quantifying and reporting uncertainty in drug discovery predictions with probabilistic models☆11Updated 2 years ago
- SIR-Hawkes: Linking Epidemic Models and Hawkes Processes to Model Diffusions in Finite Populations☆14Updated 6 years ago
- Code associated to the paper 'Simplicial models of social contagion' Nat. Commun. (2019)☆42Updated 2 years ago
- PyGenStability: Multiscale community detection with generalized Markov Stability☆33Updated last week
- Draws a 2D simplicial complex from a list of simplices.☆16Updated 4 years ago
- Probabilistic generative model and efficient algorithm to model reciprocity in directed networks.☆16Updated last year
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- Recover temporal information from grown trees, using Python☆11Updated 3 years ago
- Dynamic programming algorithms for exact linear clustering in networks.☆16Updated last year
- Code to implement the network histogram (Olhede and Wolfe, arXiv:1312.5306)☆11Updated 10 years ago
- ☆11Updated 2 years ago
- ☆25Updated 6 years ago
- D-CODE: Discovering Closed-form ODEs from Observed Trajectories☆14Updated 2 years ago
- Inference in Bayesian Networks with R☆11Updated last year
- A centralized repository for network analysis tools.☆11Updated 4 years ago
- Summer School on Network Science (UU)☆20Updated 4 months ago
- Random network generator☆16Updated 7 years ago
- ☆18Updated 2 years ago
- An extended package for clustering similarity☆64Updated 5 months ago
- A Bayesian model+algorithm for community detection in bipartite networks☆57Updated 4 years ago
- Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps☆41Updated 3 years ago