jg-you / complex-coinfection-inferenceLinks
Bayesian inference of effective contagion models from population level data, with STAN
☆14Updated 5 years ago
Alternatives and similar repositories for complex-coinfection-inference
Users that are interested in complex-coinfection-inference are comparing it to the libraries listed below
Sorting:
- Probabilistic generative model and efficient algorithm to model reciprocity in directed networks.☆16Updated 2 years ago
- Quantifying and reporting uncertainty in drug discovery predictions with probabilistic models☆11Updated 3 years ago
- The official implementation of Non-separable Spatio-temporal Graph Kernels via SPDEs.☆16Updated 3 years ago
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆22Updated 2 years ago
- A package to represent high-order relationships between objects of any type☆38Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Uncertainty and causal emergence in complex networks☆121Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆47Updated 2 years ago
- Draws a 2D simplicial complex from a list of simplices.☆15Updated 5 years ago
- Flow stability framework for dynamic community detection in temporal networks☆30Updated 3 months ago
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆67Updated 2 years ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep …☆40Updated 3 years ago
- R-package for building and fitting Bayesian ODE models in Stan☆29Updated last year
- Computes trajectories for evolutionary dynamics.☆14Updated 5 years ago
- D-CODE: Discovering Closed-form ODEs from Observed Trajectories☆15Updated 3 years ago
- ❓y0 (pronounced "why not?") is for causal inference in Python☆63Updated this week
- egtplot: A python package for 3-Strategy Evolutionary Games☆52Updated 5 months ago
- Contains methods to uniformly sample graphs with a given degree sequence.☆19Updated 6 years ago
- Bayesian inference for a logistic regression model in various languages☆43Updated 2 years ago
- Code to implement the network histogram (Olhede and Wolfe, arXiv:1312.5306)☆11Updated 11 years ago
- Motif-based weighted spectral clustering in Python, R and Julia☆28Updated last year
- Noisy network measurement with stan☆56Updated 4 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆19Updated 2 months ago
- Blang's software development kit☆25Updated last year
- Causal Inference with Invariant Prediction☆25Updated 4 years ago
- SuNBEaM, (s)pectral (n)on-(b)acktracking (e)igenvalue pseudo-(m)etric, a topological graph distance☆16Updated 5 years ago
- Code and data for the CIKM2021 paper "Learning Ideological Embeddings From Information Cascades"☆11Updated 4 years ago
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Updated last year
- Recover temporal information from grown trees, using Python☆11Updated 4 years ago