Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, etc.). Features include support for HDF5 and JSON BIOM files, retooled visualizations, improved image export and sharing, and the ability to work offline.
☆42May 7, 2024Updated 2 years ago
Alternatives and similar repositories for Phinch
Users that are interested in Phinch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆29Feb 28, 2024Updated 2 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- R shiny app for interactive microbiome analysis☆55Jun 5, 2025Updated last year
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated 2 years ago
- ☆24May 1, 2026Updated 3 months ago
- Website for The State of FOSS in India report.☆11Aug 20, 2021Updated 4 years ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- ☆12Mar 21, 2026Updated 4 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆61Dec 21, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- An interactive web application for demonstrating and using phyloseq.☆60Jul 18, 2019Updated 7 years ago
- ☆24May 6, 2020Updated 6 years ago
- Differential Count Data Analysis Toolbox☆62Jul 23, 2026Updated 3 weeks ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Pandas ExtensionDtypes for dealing with genomics data☆48May 29, 2025Updated last year
- Look Up Guild Information for Fungi in R☆26Mar 20, 2025Updated last year
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆34Feb 16, 2024Updated 2 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆22Jul 22, 2023Updated 3 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- A collaborative notebook for genes and genomes☆13Updated this week
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆25Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- wrapper functions to use ggstatsplot functions as a module in jamovi☆11Aug 3, 2026Updated last week
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jul 30, 2026Updated 2 weeks ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 4 months ago
- genomic variant frequency estimation☆12Sep 7, 2025Updated 11 months ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- ☆11May 20, 2025Updated last year