Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, etc.). Features include support for HDF5 and JSON BIOM files, retooled visualizations, improved image export and sharing, and the ability to work offline.
☆42May 7, 2024Updated 2 years ago
Alternatives and similar repositories for Phinch
Users that are interested in Phinch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- Tools for visualising microbial community amplicon data☆73Nov 3, 2025Updated 8 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆29Feb 28, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- R shiny app for interactive microbiome analysis☆55Jun 5, 2025Updated last year
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated 2 years ago
- ☆23May 1, 2026Updated 2 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Mar 21, 2026Updated 4 months ago
- An interactive web application for demonstrating and using phyloseq.☆60Jul 18, 2019Updated 7 years ago
- ☆24May 6, 2020Updated 6 years ago
- Differential Count Data Analysis Toolbox☆62Updated this week
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Look Up Guild Information for Fungi in R☆25Mar 20, 2025Updated last year
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 4 years ago
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆34Feb 16, 2024Updated 2 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆22Jul 22, 2023Updated 3 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- A collaborative notebook for genes and genomes☆13Jul 16, 2026Updated last week
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- ☆12Feb 20, 2026Updated 5 months ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆25Jun 25, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- wrapper functions to use ggstatsplot functions as a module in jamovi☆11Jul 16, 2026Updated last week
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jul 1, 2026Updated 3 weeks ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 3 months ago
- genomic variant frequency estimation☆12Sep 7, 2025Updated 10 months ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago