thewtex / ngff-zarr
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
☆27Updated this week
Alternatives and similar repositories for ngff-zarr:
Users that are interested in ngff-zarr are comparing it to the libraries listed below
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Browse your OMERO database from within napari.☆35Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆64Updated last week
- GIve easy, high-level access to ome-zarr fileset☆13Updated last week
- Command-line client for Fractal☆45Updated this week
- native Python dataclasses for the OME data model☆55Updated last week
- Multiple file format reading directly into napari using pure Python☆34Updated 5 months ago
- ☆41Updated this week
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆28Updated last week
- Interface to the Bioformats Java library☆12Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆32Updated 3 weeks ago
- Pydantic models for OME-NGFF☆22Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆38Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 2 months ago
- ☆21Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆15Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 4 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- A minimal Python package for reading OME-Zarr (meta)data☆13Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 5 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated last month
- Whole slide image registration through wsireg in napari.☆12Updated last year
- Main tasks for the Fractal analytics platform☆15Updated this week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- ☆16Updated last week
- Paint segmentations directly to on-disk/remote zarr arrays☆15Updated 6 months ago