thewtex / ngff-zarr
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
☆32Updated last month
Alternatives and similar repositories for ngff-zarr:
Users that are interested in ngff-zarr are comparing it to the libraries listed below
- A minimal Python package for reading OME-Zarr (meta)data☆23Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated this week
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- ☆41Updated this week
- Pydantic models for OME-NGFF☆23Updated this week
- A napari plugin for zarr backed OME-NGFF images☆32Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Interface to the Bioformats Java library☆13Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated last week
- Browse your OMERO database from within napari.☆36Updated this week
- Command-line client for Fractal☆45Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last week
- ☆16Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆80Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆24Updated 9 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- ☆23Updated 6 months ago
- Main tasks for the Fractal analytics platform☆15Updated this week