thewtex / ngff-zarrLinks
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
☆42Updated this week
Alternatives and similar repositories for ngff-zarr
Users that are interested in ngff-zarr are comparing it to the libraries listed below
Sorting:
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- ☆43Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 4 months ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated 3 weeks ago
- Command-line client for Fractal☆46Updated this week
- Pydantic models for OME-NGFF☆24Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated this week
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- Browse your OMERO database from within napari.☆37Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆38Updated this week
- ☆17Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated this week
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- Interface to the Bioformats Java library☆13Updated 5 months ago
- A 3D interactivity toolbox for napari☆35Updated 2 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆28Updated last year
- ☆23Updated last month
- Main tasks for the Fractal analytics platform☆16Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated 3 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago
- ☆50Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Create web-based OME-Zarr galleries☆18Updated last month