Specification for the bioimage.io model description file.
☆23Jun 15, 2026Updated this week
Alternatives and similar repositories for spec-bioimage-io
Users that are interested in spec-bioimage-io are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python libraries for loading, running and packaging bioimage.io models☆38Jun 2, 2026Updated 2 weeks ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated 11 months ago
- Command-line client for Fractal☆49Jun 9, 2026Updated last week
- ☆11May 6, 2024Updated 2 years ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- python tools for BigDataViewer☆23Dec 29, 2024Updated last year
- 3D virtual staining with 2D and 2.5D U-Nets☆34Jul 29, 2023Updated 2 years ago
- The Java library to run Deep Learning models☆35Updated this week
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- A distributed application framework for large-scale data management and AI model serving☆24Updated this week
- Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.☆44May 28, 2026Updated 3 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆82Dec 16, 2024Updated last year
- Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC …☆11Dec 17, 2020Updated 5 years ago
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆23May 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated last week
- Deep-learning library for image restoration.☆141Updated this week
- Block-wise operations for large nD volumes☆45Jun 10, 2026Updated last week
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆41Apr 24, 2026Updated last month
- A python package for fitting splines.☆23May 8, 2026Updated last month
- ☆115Jun 11, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- ilastik-shell, applets, and workflows to string them together.☆399Updated this week
- ☆12Jan 10, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Transformer-based cell tracking for live-cell microscopy☆130Mar 31, 2026Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 6 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- ☆17Sep 13, 2024Updated last year
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Reference implementation of the Graph Exchange File Format☆39Jun 10, 2026Updated last week
- Old academic project for my PhD - no longer maintained by me: fast gaussian and derivative convolutional filters☆10May 1, 2019Updated 7 years ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Functional image processing☆14May 31, 2024Updated 2 years ago
- Awesome resources related to Galaxy project☆11Nov 23, 2024Updated last year
- Mix-and-match computer vision tools for your animal behaviour analysis☆27Jun 1, 2026Updated 2 weeks ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆93Mar 24, 2026Updated 2 months ago
- Trivial example to show using Java from Clojure in deps.edn project☆18May 26, 2023Updated 3 years ago
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Jun 4, 2026Updated 2 weeks ago