bioimage-io / spec-bioimage-io
Specification for the bioimage.io model description file.
☆19Updated this week
Alternatives and similar repositories for spec-bioimage-io:
Users that are interested in spec-bioimage-io are comparing it to the libraries listed below
- Python libraries for loading, running and packaging bioimage.io models☆29Updated this week
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆27Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- ☆29Updated this week
- 1d plotting in napari-based canvas.☆26Updated this week
- Browse your OMERO database from within napari.☆35Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆68Updated 2 weeks ago
- ☆22Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆25Updated 2 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆18Updated 3 months ago
- StarDist plugin for napari☆37Updated 5 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆16Updated this week
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆48Updated this week
- A napari plugin to view and edit metadata☆10Updated last year
- ☆24Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated 2 months ago
- Running compute-intense parts of BigStitcher distributed☆21Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 3 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆26Updated this week
- my first baby steps with Napari☆10Updated 5 years ago
- Command-line client for Fractal☆45Updated this week
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated 8 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ☆10Updated 5 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated last month