Alternatives and similar repositories for QuantNorm

Users that are interested in QuantNorm are comparing it to the libraries listed below

• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated 2 months ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated last month
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• nignatiadis / IHW
  Independent Hypothesis Weighting
  ☆15Updated last year
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆38Updated 3 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 6 years ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆18Updated 4 years ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆23Updated 4 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆13Updated 6 years ago
• jtleek / svaseq
  Analysis for svaseq paper
  ☆19Updated 10 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• davidaknowles / eagle
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆21Updated 3 years ago
• Simon-Coetzee / StatePaintR
  ☆10Updated 7 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 6 months ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 7 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 5 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last month
• mozack / vdjer
  V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
  ☆29Updated 2 years ago