tengfei-emory / QuantNorm
Mitigating the adverse impact of batch effects in sample pattern detection
☆9Updated 5 years ago
Alternatives and similar repositories for QuantNorm:
Users that are interested in QuantNorm are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- ☆19Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- RNA-Seq pipeline☆34Updated 9 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 3 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 10 months ago
- Personal diploid genome creation and coordinate conversion☆22Updated 3 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆27Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated last month
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago