taowenmicro / Wen-etal-200214-paper-code
☆8Updated 5 years ago
Alternatives and similar repositories for Wen-etal-200214-paper-code:
Users that are interested in Wen-etal-200214-paper-code are comparing it to the libraries listed below
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- ☆26Updated last year
- Transform files to the microtable object with microeco package☆27Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 6 months ago
- dada2 formatted nifH database☆11Updated 11 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆13Updated 3 years ago
- ☆12Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- ☆12Updated last year
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- ☆14Updated last month
- ☆48Updated 4 years ago
- ☆16Updated 6 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- ☆23Updated 6 years ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 9 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 3 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Integrated Network Analysis Pipeline☆15Updated 4 months ago