taowenmicro / Wen-etal-200214-paper-code
☆8Updated 4 years ago
Alternatives and similar repositories for Wen-etal-200214-paper-code:
Users that are interested in Wen-etal-200214-paper-code are comparing it to the libraries listed below
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- dada2 formatted nifH database☆11Updated 8 months ago
- ☆13Updated 3 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 5 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆25Updated last year
- Transform files to the microtable object with microeco package☆24Updated last month
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 6 years ago
- ☆12Updated 3 years ago
- ☆15Updated 3 years ago
- ☆22Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆30Updated this week
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆45Updated 3 years ago
- ☆11Updated 10 months ago
- ☆49Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 3 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- ☆70Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- phyloseq R☆11Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- Statistics and visualization for amplicon data☆70Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Data and scripts for amplicon pipeline☆25Updated 5 years ago