taowenmicro / Wen-etal-200214-paper-codeLinks
☆8Updated 5 years ago
Alternatives and similar repositories for Wen-etal-200214-paper-code
Users that are interested in Wen-etal-200214-paper-code are comparing it to the libraries listed below
Sorting:
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- dada2 formatted nifH database☆12Updated last year
- ☆27Updated last year
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- ☆49Updated 4 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- ☆14Updated 2 months ago
- ☆13Updated 4 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆23Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆32Updated this week
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- ☆75Updated last year
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- ☆12Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated 11 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- ☆55Updated last month
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- ☆14Updated 10 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 7 months ago
- Integrated Network Analysis Pipeline☆16Updated 6 months ago