Alternatives and similar repositories for sci_palettes

Users that are interested in sci_palettes are comparing it to the libraries listed below

• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆51Updated 11 months ago
• CypRiv / genal
  Python module for genetic analyses
  ☆15Updated 3 months ago
• BorgwardtLab / reComBat
  reComBat package to correct batch effects
  ☆13Updated 2 years ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆31Updated 4 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆35Updated 11 months ago
• exascale-genomics / SAIGE-GPU
  A GPU version of SAIGE for full GRM GWAS analysis
  ☆18Updated 2 months ago
• gregbellan / Stabl
  ☆66Updated 10 months ago
• schillerlab / sc-toolbox
  A collection of project templates and useful functions for single-cell data analysis with Scanpy.
  ☆20Updated 2 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 11 months ago
• dvitale199 / GenoTools
  GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…
  ☆30Updated last week
• adoebley / Griffin_analyses
  Scripts for analyses in the Griffin manuscript
  ☆11Updated 2 years ago
• PMBio / deeprvat
  ☆40Updated 3 months ago
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆38Updated 7 months ago
• Maarten-vd-Sande / qnorm
  Fast-ish (and correct!) quantile normalization in Python.
  ☆31Updated 4 months ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆47Updated last year
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆30Updated 2 years ago
• ponnhide / pyCircos-examples
  Example notebooks of pyCircos
  ☆29Updated 3 years ago
• YuanTian1991 / ChAMP
  ☆24Updated 3 weeks ago
• harryhaller001 / keggtools
  Library for KEGG pathway enrichment analysis
  ☆16Updated 4 months ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆52Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated this week
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated 2 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated 3 weeks ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆29Updated 4 years ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆108Updated last month
• cancer-genomics / reproduce_lucas_wflow
  ☆31Updated last year
• arnor-sigurdsson / EIR
  A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
  ☆41Updated last week
• lilab-bcb / cirrocumulus
  Bring your single-cell data to life
  ☆88Updated last week
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago