lucian-ilie / DELPHILinks
Deep learning protein-protein binding sites prediction
☆20Updated 2 years ago
Alternatives and similar repositories for DELPHI
Users that are interested in DELPHI are comparing it to the libraries listed below
Sorting:
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- ☆30Updated 2 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Graph Network for protein-protein interface including language model features☆32Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Graph Learning of INTER-protein contacts☆9Updated 3 years ago
- ☆23Updated 4 years ago
- predict stability change upon mutation☆28Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆46Updated last week
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 2 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 2 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆36Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆23Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- ☆36Updated 6 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- Deep ResNet-based protein contact prediction☆19Updated 5 years ago
- ☆20Updated last year
- ☆18Updated 5 months ago
- ☆13Updated 7 years ago
- ☆29Updated 5 years ago
- Protein design and variant prediction using autoregressive generative models☆23Updated 2 years ago