sprouffske / growthcurverView external linksLinks
Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whose parameters (the growth rate, the initial population size, and the carrying capacity) provide meaningful population-level information with straight-forward biological interpretation.
☆48Dec 21, 2021Updated 4 years ago
Alternatives and similar repositories for growthcurver
Users that are interested in growthcurver are comparing it to the libraries listed below
Sorting:
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆37Jan 29, 2026Updated 2 weeks ago
- Tools to make it easy to work with microtiter plate-shaped data☆25Oct 25, 2024Updated last year
- Bayesian No-Effect-Concentration estimation in R☆14Dec 19, 2025Updated last month
- Robust and user-friendly analysis of growth curves☆29Sep 19, 2025Updated 4 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 2 years ago
- Examples on INLA within MCMC☆12May 15, 2017Updated 8 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Aug 12, 2025Updated 6 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Survival Extrapolation With a Flexible Parametric Model and External Data☆12Jan 12, 2026Updated last month
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 3 weeks ago
- ☆14Nov 21, 2025Updated 2 months ago
- ☆11May 3, 2017Updated 8 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 10 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 2 years ago
- Predicting microbial growth in a mixed culture from growth curve data☆14Jan 20, 2026Updated 3 weeks ago
- Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data☆30Sep 4, 2025Updated 5 months ago
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Jan 1, 2026Updated last month
- Resize text on quarto slides☆15Sep 18, 2023Updated 2 years ago
- ☆22Jan 18, 2026Updated 3 weeks ago
- Repository for book "Bayesian Statistics Using Stan", text files in Rmarkdown, plus example data, Stan models, and scripts☆15Oct 10, 2018Updated 7 years ago
- Short course on parametric survival analysis☆15Nov 22, 2024Updated last year
- R package to search for that one function you need in that one package☆15Nov 8, 2024Updated last year
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- The rtransparent R package.☆14Dec 24, 2024Updated last year
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Repo for code for "Unrepresentative Surveys Significantly Overestimate Vaccine Uptake in the US"☆15Dec 18, 2021Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Dec 5, 2025Updated 2 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 3 years ago
- R Shiny wrapper for Mol* (/'molstar/) - A visualization toolkit of large-scale molecular data☆19Feb 7, 2026Updated last week
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Feb 10, 2026Updated last week
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- A recopilation of nonlinear growth models used in many branches of science☆20Apr 22, 2018Updated 7 years ago
- Material for a course on (intermediate) Bayesian regression modeling☆21Mar 27, 2025Updated 10 months ago
- R package for response-surface methodology☆18Mar 24, 2025Updated 10 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆40Updated this week