sprouffske / growthcurverLinks
Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whose parameters (the growth rate, the initial population size, and the carrying capacity) provide meaningful population-level information with straight-forward biological interpretation.
☆48Updated 4 years ago
Alternatives and similar repositories for growthcurver
Users that are interested in growthcurver are comparing it to the libraries listed below
Sorting:
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆37Updated 5 months ago
- Analysis of Phylogenetics and Evolution☆73Updated 7 months ago
- Species richness with high diversity☆68Updated 5 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last month
- diversity estimation under ecological networks☆83Updated 5 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 6 years ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆96Updated 2 months ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆103Updated 2 months ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆69Updated last year
- Simple R utilities for working with HMMER☆19Updated last year
- accessory functions for processing microbial community data☆12Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 8 months ago
- Miscellaneous functions for metagenomic analysis.☆51Updated 2 weeks ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated 5 months ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆128Updated 4 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Updated last month
- Creating plasmid maps inside ggplot.☆88Updated 4 months ago
- Linear Decomposition Model☆25Updated 2 years ago
- User-Friendly R Package for Supervised Machine Learning Pipelines☆60Updated 2 months ago
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 3 months ago
- Tools for visualising microbial community amplicon data☆70Updated 2 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last week
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆19Updated 3 weeks ago
- Microbial community analysis tools in R☆22Updated 3 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 5 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago