A web application for interactive visualization and exploratory data analysis of variant call matrices
☆21Jul 17, 2023Updated 2 years ago
Alternatives and similar repositories for divbrowse
Users that are interested in divbrowse are comparing it to the libraries listed below
Sorting:
- ☆12Jun 27, 2024Updated last year
- Practical Haplotype Graph (PHG) version 2☆30Updated this week
- PhenoPLIER☆15Apr 8, 2024Updated last year
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated 3 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Jan 22, 2026Updated last month
- ☆37Feb 5, 2022Updated 4 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago
- A python tool to evaluate genomic prediction in complex scenarios☆37Oct 18, 2022Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆35Jul 21, 2025Updated 7 months ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated 9 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated 2 weeks ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 3 months ago
- Web content for Meren Lab☆11Feb 23, 2026Updated last week
- A rapid and low-memory multiple-genome aligner for closely related genomes☆24Sep 3, 2025Updated 6 months ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆13May 31, 2025Updated 9 months ago
- ☆17Dec 4, 2025Updated 3 months ago
- Transform natural language into beautiful, interactive data visualizations using the Model Context Protocol (MCP) with Claude Desktop int…☆16Jun 27, 2025Updated 8 months ago
- Repeat-injection-based quality control, batch correction, exploration, & data cleaning.☆11Feb 27, 2026Updated last week
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 4 months ago
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆14Jan 15, 2026Updated last month
- R package for fitting high-dimensional multivariate linear mixed effect models☆37Oct 20, 2025Updated 4 months ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- Package for pooling the results from (dependent) tests☆12Dec 1, 2025Updated 3 months ago
- ☆10Sep 18, 2023Updated 2 years ago
- MicrobeRX☆16Aug 11, 2025Updated 6 months ago
- ☆12Jan 15, 2021Updated 5 years ago
- From metagenomes to epitopes and beyond☆12Feb 20, 2026Updated 2 weeks ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆11Nov 14, 2024Updated last year
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 3 months ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 2 weeks ago
- ☆15Mar 24, 2025Updated 11 months ago
- Use Google's Speech to text engine with Siri.☆14Jun 25, 2016Updated 9 years ago
- A Swift library for interacting with Xcode projects.☆11Sep 14, 2016Updated 9 years ago