Alternatives and similar repositories for datafunk:

Users that are interested in datafunk are comparing it to the libraries listed below

• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆15Updated last year
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 3 months ago
• nextstrain / zika-tutorial
  Data and scripts for Zika virus tutorial
  ☆10Updated last month
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆34Updated last week
• fbreitwieser / card-krakendb
  Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database
  ☆10Updated 8 years ago
• yatisht / strain_phylogenetics
  Tools for analyzing and comparing SARS-CoV-2 phylogenies
  ☆9Updated 4 years ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆20Updated 3 years ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆29Updated this week
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆25Updated 6 months ago
• jmcbroome / autolin
  Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
  ☆14Updated last year
• lmward / MetaPOAP
  the Metagenomic test for Presence Or Absence of Pathways
  ☆13Updated 5 years ago
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆27Updated this week
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated 11 months ago
• emilhaegglund / schavott
  Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
  ☆9Updated 6 years ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆15Updated 6 months ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆15Updated 4 months ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆32Updated last month
• phac-nml / biohansel
  Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
  ☆27Updated last month
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• ktmeaton / ncov-recombinant
  Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
  ☆18Updated last year
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated last year
• jhuapl-bio / taxtriage
  TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…
  ☆34Updated last week
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• duchene / phylomad
  ☆19Updated 7 months ago
• tanaes / snakemake_assemble
  Modular snakemake workflow for assembly-based metagenomics
  ☆10Updated 7 years ago
• trvrb / phylodynamics-lecture
  Lecture on viral phylodynamics
  ☆12Updated 3 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 10 months ago