chanzuckerberg / galago
Interpretation aids for genomic epidemiology
☆9Updated 5 months ago
Alternatives and similar repositories for galago:
Users that are interested in galago are comparing it to the libraries listed below
- SARs-CoV-2 Primer schemes☆15Updated 2 years ago
- Utility to alias and dealias pango lineages☆22Updated last year
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated last week
- app to collapse Pango lineages for reporting☆11Updated last year
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated 8 months ago
- Main development repository for SpreadGL☆18Updated 6 months ago
- Influenza data pipeline to automate genotyping assignment☆31Updated 2 months ago
- Data and scripts for Zika virus tutorial☆10Updated 4 months ago
- Nextstrain build for avian influenza viruses☆25Updated 3 weeks ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆12Updated last week
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆33Updated this week
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆31Updated last week
- ☆20Updated 2 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆36Updated this week
- ☆17Updated 10 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Consensus sequences for each Pango lineage☆21Updated this week
- Systematic ProtEin AnnotatoR☆19Updated 6 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last month
- REcombination BARcode detector.☆13Updated last year