Sparse Lazy Array Format (SLAF) for Single-Cell Genomics
☆61May 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for slaf
Users that are interested in slaf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆45May 22, 2026Updated 3 weeks ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆78Mar 23, 2026Updated 2 months ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆128May 25, 2026Updated 3 weeks ago
- A single-cell RNA-seq data generative model☆19Jan 11, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Oct 28, 2022Updated 3 years ago
- Comprehensive suite for evaluating perturbation prediction models☆137Updated this week
- Curate datasets with ease.☆32Sep 19, 2024Updated last year
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- Estimate microRNA activity in single cells☆13May 4, 2022Updated 4 years ago
- Associate pathways + gene ontologies with significant genes.☆10Jun 5, 2023Updated 3 years ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆62May 11, 2026Updated last month
- ☆18Apr 6, 2023Updated 3 years ago
- Causal discovery of gene regulatory programs from single-cell genomics☆19Sep 5, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Skip the peaks and expose RNA-binding in CLIP data☆10Apr 29, 2026Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆32Jan 3, 2025Updated last year
- RSG Turkey Student Symposium 2020 - Workshop Session☆13Dec 17, 2020Updated 5 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆131May 8, 2026Updated last month
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Oct 7, 2024Updated last year
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- A pretrained single cell gene expression language model☆12Jun 6, 2023Updated 3 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆81May 8, 2024Updated 2 years ago
- Bulk RNA-seq analysis.☆35Oct 25, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆27Apr 9, 2025Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 6 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆12Jun 3, 2026Updated last week
- team lander github repo☆10Aug 7, 2021Updated 4 years ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- ☆16Dec 18, 2024Updated last year
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆12Aug 7, 2020Updated 5 years ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆133Apr 27, 2026Updated last month
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 5 months ago
- Highly informative TCR representation model☆16Nov 26, 2025Updated 6 months ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14May 7, 2026Updated last month
- ☆24Mar 4, 2026Updated 3 months ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 5 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago