Sparse Lazy Array Format (SLAF) for Single-Cell Genomics
☆49Feb 24, 2026Updated last week
Alternatives and similar repositories for slaf
Users that are interested in slaf are comparing it to the libraries listed below
Sorting:
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- Associate pathways + gene ontologies with significant genes.☆10Jun 5, 2023Updated 2 years ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆45Dec 11, 2025Updated 2 months ago
- Differential expression and allelic analysis, nonparametric statistics☆30Jan 3, 2025Updated last year
- A single-cell RNA-seq data generative model☆18Jan 11, 2025Updated last year
- Bulk RNA-seq analysis.☆35Oct 25, 2023Updated 2 years ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- team lander github repo☆10Aug 7, 2021Updated 4 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 10 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 4 years ago
- ☆25Jan 30, 2026Updated last month
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 3 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated 11 months ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- ☆19Apr 6, 2023Updated 2 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆113Updated this week
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- ☆24Jan 17, 2025Updated last year
- ☆26Apr 9, 2025Updated 10 months ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated this week
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 5 months ago
- An analytics package for single cell data☆22May 18, 2022Updated 3 years ago
- Brings SummarizedExperiment to the tidyverse☆30Dec 22, 2025Updated 2 months ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago