R code for analyses in the manuscript "Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches"
☆10Mar 19, 2021Updated 5 years ago
Alternatives and similar repositories for Fungal-bacterial-network-construction-and-analysis
Users that are interested in Fungal-bacterial-network-construction-and-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆53Dec 9, 2021Updated 4 years ago
- This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Uni…☆20Nov 2, 2020Updated 5 years ago
- ☆25Mar 2, 2019Updated 7 years ago
- ☆14Mar 21, 2025Updated last year
- staRdom is a package for R to analyse fluorescence and absorbance data of dissolved organic matter (DOM).☆32Feb 19, 2026Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- The cdom package implements various functions used to model and calculate metrics from absorption spectra of chromophotic dissolved organ…☆12May 12, 2026Updated 5 months ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆27Apr 22, 2020Updated 6 years ago
- R package to perform calculations on data produced from quantitative stable isotope probing (qSIP) experiments☆10Oct 14, 2025Updated last year
- Tools for treatment high res mass spectrum of natural organic matter samples☆14Aug 4, 2023Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- ☆22Nov 13, 2019Updated 6 years ago
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆23Dec 5, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆19Jun 25, 2025Updated last year
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆19Jul 8, 2020Updated 6 years ago
- Tutorial for performing redundancy analysis☆17Oct 21, 2020Updated 6 years ago
- 微生信生物☆26Mar 17, 2025Updated last year
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year
- Nextflow pipeline for the analysis of metagenomic short reads.☆25Sep 24, 2026Updated last month
- Command-line tool for building Gephi force-directed graph diagrams.☆11Nov 10, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Feb 16, 2021Updated 5 years ago
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆97Sep 24, 2026Updated last month
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆29Jul 21, 2022Updated 4 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Walkthrough code for predicting soil properties using mid infrared spectroscopy☆12Jun 28, 2021Updated 5 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Code repository for R Data Mining Blueprints, published by Packt☆10Jan 14, 2021Updated 5 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated 2 years ago
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- Disease Prediction by Cell-Free DNA Methylation☆11Feb 8, 2018Updated 8 years ago
- ☆13Aug 6, 2025Updated last year
- R package plspm☆77Mar 27, 2022Updated 4 years ago