Fine-grained Spatial Transcriptomics by integrating paired histology image
☆35Aug 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for FineST
Users that are interested in FineST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Sep 16, 2025Updated 11 months ago
- ☆29Dec 17, 2025Updated 8 months ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 2 months ago
- ☆22Feb 5, 2025Updated last year
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆27Dec 11, 2024Updated last year
- ☆17Mar 31, 2026Updated 4 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Spatial Expression-Aligned Learning to improve pathology foundation models☆48Feb 17, 2026Updated 6 months ago
- ☆12Sep 7, 2023Updated 2 years ago
- ☆21Oct 28, 2025Updated 10 months ago
- Reasoning as the Engine: The Evolution from Medical LLMs to Versatile Medical Agents☆41Jan 27, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 6 months ago
- This repository is for CellBin research group☆36Updated this week
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots☆67Apr 12, 2026Updated 4 months ago
- ☆25Apr 3, 2025Updated last year
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 3 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago
- ☆20Oct 28, 2024Updated last year
- ☆21Aug 19, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 9 months ago
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Mar 22, 2022Updated 4 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- ☆26Nov 25, 2025Updated 9 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆433Apr 16, 2026Updated 4 months ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆24May 16, 2025Updated last year
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Updated this week
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- ☆171Dec 20, 2024Updated last year
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆148Jun 3, 2025Updated last year
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆17Jun 26, 2026Updated 2 months ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago