Single Cell Genomes with Allele Specificity
☆14Nov 5, 2026Updated this week
Alternatives and similar repositories for signals
Users that are interested in signals are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jul 2, 2026Updated 4 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 4 months ago
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆38Dec 15, 2020Updated 5 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆21Aug 7, 2026Updated 2 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 4 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆22Sep 7, 2026Updated 2 months ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 11 months ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆73Sep 29, 2026Updated last month
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆12Oct 31, 2024Updated 2 years ago
- Inferring admixture proportions from NGS data☆13Oct 15, 2026Updated 3 weeks ago
- ☆12Apr 25, 2024Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Updated this week
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆45Aug 21, 2025Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 3 months ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- Travel planning Streamlit web-app based on OpenAI API☆26Sep 6, 2025Updated last year
- Fast method for inferring cancer clonal population structure from SNV data.☆76Jan 20, 2026Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- Gene Set Enrichment Analysis Made Awesome☆12May 11, 2018Updated 8 years ago
- Git repo for CONIPHER tree building☆28Oct 22, 2026Updated 2 weeks ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago